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[173483_s_at]

Description C64178 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC395.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C64178 /WB_GENE_ID=ZC395.8 /WP=CE26334 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk354c1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 84      6grp_total > 68      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 441.6
(3)
P 		379.6
(-3)
P 		425.1
(1.4)
P 		423.9
(1.3)
P 		62
B 431.8
(1.8)
P 		433.6
(2.1)
P 		440.7
(3)
P 		395.6
(-3)
P 		45
C 489.5
(3)
P 		484.4
(-3)
P 		485
(-2.3)
P 		488.5
(1.8)
P 		5
avr 454.3
(3) 		432.5
(-3) 		450.3
(1.9) 		436
(-2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 656.9
(0.3)
P 		553.2
(-0.9)
P 		362.3
(-3)
P 		475
(-1.7)
P 		521.9
(-1.2)
P 		900.6
(3)
P 		538
B 486.3
(-1.8)
P 		437.7
(-2.6)
P 		410
(-3)
P 		598.7
(-0.1)
P 		514.9
(-1.4)
P 		807.2
(3)
P 		397
C 508.2
(-2.3)
P 		469.3
(-3)
P 		584.3
(-1)
P 		550.9
(-1.6)
P 		558.7
(-1.5)
P 		817.6
(3)
P 		348
avr 550.5
(-1.5) 		486.7
(-2.5) 		452.2
(-3) 		541.5
(-1.6) 		531.8
(-1.8) 		841.8
(3) 		390
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 160.8
(3)
P 		82.4
(-1.8)
P 		111.1
(-0)
P 		62.1
(-3)
P 		99
B 137.7
(3)
P 		107.1
(-0.4)
P 		102.1
(-1)
P 		84.3
(-3)
P 		53
C 162.1
(2.5)
P 		139.3
(0.9)
P 		169
(3)
P 		82.4
(-3)
P 		87
avr 153.5
(3) 		109.6
(-0.4) 		127.4
(1) 		76.3
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 121.1
(-1.2)
P 		196.7
(2)
P 		78.9
(-3)
P 		120.5
(-1.2)
P 		157.5
(0.4)
P 		219.3
(3)
P 		140
B 169.2
(-0.9)
P 		145.7
(-1.6)
P 		99.6
(-3)
P 		158.6
(-1.2)
P 		209.2
(0.3)
P 		301
(3)
P 		201
C 188.4
(-0.1)
P 		143.2
(-1.8)
P 		148.7
(-1.6)
P 		110.8
(-3)
P 		180.8
(-0.4)
P 		273.7
(3)
P 		163
avr 159.6
(-1.1) 		161.9
(-1) 		109.1
(-3) 		130
(-2.2) 		182.5
(-0.2) 		264.7
(3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173483_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23888
Sequence Type Exemplar sequence
Representative Public ID C64178 NCBI
Target Description C64178 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC395.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C64178 /WB_GENE_ID=ZC395.8 /WP=CE26334 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk354c1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065723 NCBI Caenorhabditis elegans ZC395.8 (ZC395.8) mRNA, complete cds. 11/11 None
SNAP00000016749 ENSEMBL cdna:SNAP chromosome:CEL140:III:5268919:5273426:-1 11/11 None
GENEFINDER00000016764 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5268919:5270128:-1 10/11 None
ZC395.8 ENSEMBL cdna:known chromosome:CEL140:III:5268639:5273428:-1 gene:ZC395.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5268776-5273426(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC395.8
Entrez Gene 175726 Entrez gene
SwissProt Q9GYG1 EMBL-EBI
WormBase CE33011 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG00043 Hypothetical protein ZC395.8 [Caenorhabditis elegans] ref|NP_498124.2| ZC395.8 [Caenorhabditis elegans] 0.0
blast T27542 hypothetical protein ZC395.9 - Caenorhabditis elegans 0.0
blast CAE73683 Hypothetical protein CBG21193 [Caenorhabditis briggsae] 1.0E-147
blast T27540 hypothetical protein ZC395.8 - Caenorhabditis elegans 7.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:173483_S_AT
acagtactctaccatcaattccaattccatcaatcttctcaccatatgagccaattgttc
caccaccagctacatctccagatccaatgaatccgccaattgcatcactgcttccaactc
gaattctcgtagctcaagaagatcgacatcacgtgaacgttcttccaacagaaactacga
tgaaagatggtctcgaaatgactacagtaaccctcgtaactacagcaatcgttcattcca
tcaacgaaaccaacggggacattcatcatcgaatcgtttcaattctccatttgttagtcg
aaataactacaacaacaattctgaaacaactgaaggatcttctcgtcgttccgaatataa
ttcttcgtcttccaatcatcattcccgttcgtcatatcgtggcaatcgagatgatcgagg
ctctcgatggtaaagccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGTACTCTACCATCAATTCCAAT 338 107 1605 Antisense
CCATATGAGCCAATTGTTCCACCAC 654 269 1646 Antisense
CCAGCTACATCTCCAGATCCAATGA 352 271 1670 Antisense
AATGAATCCGCCAATTGCATCACTG 194 165 1690 Antisense
ATCACGTGAACGTTCTTCCAACAGA 513 27 1752 Antisense
TGACTACAGTAACCCTCGTAACTAC 542 569 1803 Antisense
ACTACAGCAATCGTTCATTCCATCA 476 101 1823 Antisense
AACTGAAGGATCTTCTCGTCGTTCC 137 143 1932 Antisense
TATAATTCTTCGTCTTCCAATCATC 244 661 1960 Antisense
ATTCCCGTTCGTCATATCGTGGCAA 301 9 1985 Antisense
GAGGCTCTCGATGGTAAAGCCGCCA 663 405 2021 Antisense
Sequence Source Affymetrix Proprietary Database