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[173482_s_at]

Description C71583 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01D1.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C71583 /WB_GENE_ID=T01D1.6 /WP=CE28071 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk446g9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      6grp_highest_nonorm > 88      6grp_total > 99      4grp_total > 50      6grp_cgc > 89      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2899
1 2 3 4 range
A 45.5
(-3)
A 		2937.4
(3)
P 		2201.1
(1.5)
P 		97.3
(-2.9)
A 		2892
B 38
(-3)
A 		2888.5
(3)
P 		2441.2
(2.1)
P 		141.9
(-2.8)
P 		2851
C 73.8
(-3)
A 		2659.1
(3)
P 		2115.5
(1.7)
P 		174.6
(-2.8)
P 		2585
avr 52.4
(-3) 		2828.3
(3) 		2252.6
(1.8) 		137.9
(-2.8) 		2776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1229
1 2 3 4 5 6 range
A 952.9
(-1.2)
P 		1277.7
(0.4)
P 		588.7
(-3)
P 		883.1
(-1.6)
P 		1817.6
(3)
P 		1709.2
(2.5)
P 		1229
B 936.3
(-1.1)
P 		1198.8
(0.6)
P 		655.1
(-3)
P 		1081.6
(-0.2)
P 		1554.8
(3)
P 		1482.6
(2.5)
P 		900
C 856.7
(-2.1)
P 		1189.3
(-0.2)
P 		704.6
(-3)
P 		899.5
(-1.9)
P 		1751.9
(3)
P 		1372.2
(0.8)
P 		1047
avr 915.3
(-1.5) 		1221.9
(0.2) 		649.5
(-3) 		954.7
(-1.3) 		1708.1
(3) 		1521.3
(1.9) 		1059
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 752
1 2 3 4 range
A 16.6
(-3)
A 		637.6
(3)
P 		575.4
(2.4)
P 		14.2
(-3)
A 		623
B 12.1
(-3)
A 		713.4
(3)
P 		565.7
(1.7)
P 		30.2
(-2.8)
P 		701
C 24.4
(-3)
A 		764.5
(3)
P 		737.3
(2.8)
P 		29.4
(-3)
P 		740
avr 17.7
(-3) 		705.2
(3) 		626.1
(2.3) 		24.6
(-2.9) 		688

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 504
1 2 3 4 5 6 range
A 175.7
(-2.3)
P 		454.4
(1.7)
P 		128.2
(-3)
P 		224
(-1.6)
P 		548.5
(3)
P 		416.1
(1.1)
P 		420
B 325.8
(-0.9)
P 		399
(0)
P 		159.1
(-3)
P 		286.5
(-1.4)
P 		631.7
(3)
P 		552.8
(2)
P 		473
C 317.6
(-0.9)
P 		362.9
(-0.2)
P 		179.3
(-3)
P 		180.9
(-3)
P 		566.9
(3)
P 		459.3
(1.3)
P 		388
avr 273
(-1.3) 		405.4
(0.5) 		155.5
(-3) 		230.5
(-1.9) 		582.4
(3) 		476.1
(1.5) 		427
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173482_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23551
Sequence Type Exemplar sequence
Representative Public ID C71583 NCBI
Target Description C71583 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01D1.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C71583 /WB_GENE_ID=T01D1.6 /WP=CE28071 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk446g9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061278 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-11) (abu-11) mRNA, complete cds. 11/11 None
T01D1.6 ENSEMBL cdna:known chromosome:CEL140:II:192531:194558:-1 gene:T01D1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:192541-194535(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol abu-11
Ensembl T01D1.6
Entrez Gene 173404 Entrez gene
SwissProt P91419 EMBL-EBI
WormBase CE28071 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37887 Activated in blocked unfolded protein response protein 11 [Caenorhabditis elegans] ref|NP_493679.1| Activated in Blocked Unfolded protein response family member (abu-11) [Caenorhabditis elegans] 2.0E-19
blast CAE62794 Hypothetical protein CBG06968 [Caenorhabditis briggsae] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 1.1E-35
Sequence
Target Sequence 
>C. ELEGANS:173482_S_AT
aaactcgtgccttaacacatgccagcagcaacagcagccagtgcaacagtgccaatcatc
atgtgatcaatcgtgccagccacaatgtgccacgccatctggctccgcttacaaccaagt
caactaccagccacaggcccagaacaactaccaaaccaacaacaactaccaacagccagg
agccattccatcataccaaggagcttcccagactgctgcaccaacctaccagccatacag
agacaccaatgttcaggtcggaggaaccatctcccagtgcaacacttgccaaacccagtg
caaccaggaatgccaagtccagcagaccccagtgaaccagtgcgctccacaatgcgacgc
tcaatgccagccagcctgctccccagctgctccagcagctccagttcaaacgcaacaaca
aattcagcttaccatcaatgttccagttgctcgtcagtccccacagtgtcagccacaatg
tgagcaaagctgcaacacccaatgcattcagcaacagcaaccaatctcgcagtgtcagcc
agcttgtcagcagagttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTCGTGCCTTAACACATGCCAG 353 127 670 Antisense
CAGCAGCCAGTGCAACAGTGCCAAT 149 205 701 Antisense
TCATGTGATCAATCGTGCCAGCCAC 207 623 728 Antisense
AACTACCAACAGCCAGGAGCCATTC 299 139 833 Antisense
CATACCAAGGAGCTTCCCAGACTGC 505 209 861 Antisense
TCAGGTCGGAGGAACCATCTCCCAG 231 623 922 Antisense
TCTCCCAGTGCAACACTTGCCAAAC 657 609 939 Antisense
GCAGCTCCAGTTCAAACGCAACAAC 533 313 1064 Antisense
ACCATCAATGTTCCAGTTGCTCGTC 424 85 1100 Antisense
AGCAACAGCAACCAATCTCGCAGTG 210 77 1179 Antisense
GTCAGCCAGCTTGTCAGCAGAGTTG 536 465 1203 Antisense
Sequence Source Affymetrix Proprietary Database