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[173481_at]

Description C63083 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y41E3.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C63083 /WB_GENE_ID=Y41E3.1 /WP=CE18369 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk321f3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 65      6grp_total > 90      4grp_total > 62      6grp_highest_sub > 04      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 483
1 2 3 4 range
A 1300.8
(3)
P 		960.1
(-1.2)
P 		1194.7
(1.7)
P 		817.7
(-3)
P 		483
B 1234.8
(3)
P 		1062.6
(0)
P 		1055.4
(-0.1)
P 		887.8
(-3)
P 		347
C 1170.8
(2.3)
P 		1036.4
(0)
P 		1212.3
(3)
P 		858.9
(-3)
P 		353
avr 1235.5
(3) 		1019.7
(-0.4) 		1154.1
(1.7) 		854.8
(-3) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 837
1 2 3 4 5 6 range
A 1397
(2.6)
P 		1364.2
(2.1)
P 		1239.2
(-0.2)
P 		1314.6
(1.2)
P 		1416.5
(3)
P 		1085
(-3)
P 		332
B 1276.1
(0.6)
P 		1210.9
(0.1)
P 		771.7
(-3)
P 		1609
(3)
P 		1245
(0.4)
P 		1413
(1.6)
P 		837
C 1086.8
(-2.6)
P 		1142.5
(-1.3)
P 		1340.6
(3)
P 		1217
(0.3)
P 		1067.1
(-3)
P 		1315.9
(2.5)
P 		274
avr 1253.3
(0.1) 		1239.2
(-0.2) 		1117.2
(-3) 		1380.2
(3) 		1242.9
(-0.1) 		1271.3
(0.5) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 473.6
(3)
P 		208.4
(-1.5)
P 		312.3
(0.3)
P 		119.7
(-3)
P 		354
B 393.8
(3)
P 		262.4
(-0.9)
P 		244.6
(-1.4)
P 		189.2
(-3)
P 		205
C 387.6
(2.2)
P 		298
(0.3)
P 		422.5
(3)
P 		144.8
(-3)
P 		278
avr 418.3
(3) 		256.3
(-0.6) 		326.5
(0.9) 		151.2
(-3) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 257.5
(-3)
P 		485.2
(3)
P 		269.9
(-2.7)
P 		333.4
(-1)
P 		427.4
(1.5)
P 		264.2
(-2.8)
P 		228
B 444
(1.5)
P 		403
(0.8)
P 		187.4
(-3)
P 		426.2
(1.2)
P 		505.8
(2.6)
P 		526.9
(3)
P 		340
C 402.8
(1.8)
P 		348.6
(0.2)
P 		341.2
(-0)
P 		244.7
(-3)
P 		345.3
(0.1)
P 		440.5
(3)
P 		196
avr 368.1
(0.8) 		412.3
(2.5) 		266.2
(-3) 		334.8
(-0.4) 		426.2
(3) 		410.5
(2.4) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24688
Sequence Type Exemplar sequence
Representative Public ID C63083 NCBI
Target Description C63083 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y41E3.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C63083 /WB_GENE_ID=Y41E3.1 /WP=CE18369 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk321f3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070406 NCBI Caenorhabditis elegans Y41E3.1 (Y41E3.1) mRNA, complete cds. 11/11 A 
Y41E3.1 ENSEMBL cdna:known chromosome:CEL140:IV:14954179:14958876:-1 gene:Y41E3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14954202-14958843(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41E3.1
Entrez Gene 178413 Entrez gene
SwissProt O62436 EMBL-EBI
WormBase CE32966 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1626240_S_AT dm
DROSGENOME1:141477_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB09003 Hypothetical protein Y41E3.1 [Caenorhabditis elegans] ref|NP_502807.2| Y41E3.1 [Caenorhabditis elegans] 0.0
blast CAE68136 Hypothetical protein CBG13784 [Caenorhabditis briggsae] 0.0
blast CAE68122 Hypothetical protein CBG13765 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502807.2 1 13-32
Y41E3.1 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:173481_AT
tatgatcgtgtttgatgatgccttattttctaaattattttatttttttccttttttttc
cgtttttttccctacaggtttccggtgtacttataacataatacacttctcctcacccat
tcttgtacaatttctcgctctgttcttatacatttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGATCGTGTTTGATGATGCCTTA 25 657 2144 Antisense
GTGTTTGATGATGCCTTATTTTCTA 145 487 2151 Antisense
GATGATGCCTTATTTTCTAAATTAT 698 409 2157 Antisense
CAGGTTTCCGGTGTACTTATAACAT 408 61 2218 Antisense
TATAACATAATACACTTCTCCTCAC 123 661 2235 Antisense
CCTCACCCATTCTTGTACAATTTCT 169 269 2254 Antisense
CCCATTCTTGTACAATTTCTCGCTC 197 257 2259 Antisense
TCTTGTACAATTTCTCGCTCTGTTC 346 619 2264 Antisense
TACAATTTCTCGCTCTGTTCTTATA 101 643 2269 Antisense
AATTTCTCGCTCTGTTCTTATACAT 442 175 2272 Antisense
TCTCGCTCTGTTCTTATACATTTCC 348 611 2276 Antisense
Sequence Source Affymetrix Proprietary Database