[Home] | [Total List]

[173480_s_at]

Description C70215 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y5H2B.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70215 /WB_GENE_ID=Y5H2B.5 /WP=CE26222 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384e3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_high_8_8 > 06      6grp_highest_nonorm > 97      6grp_total > 68      4grp_total > 02      6grp_highest_sub > Da      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7197
1 2 3 4 range
A 554.6
(-2.8)
P 		370
(-2.9)
P 		293.5
(-3)
M 		7447.9
(3)
P 		7154
B 550.6
(-2.7)
P 		251.2
(-3)
A 		288.3
(-3)
P 		5993.3
(3)
P 		5742
C 541.5
(-2.8)
P 		339
(-2.9)
P 		285
(-3)
P 		6583.1
(3)
P 		6298
avr 548.9
(-2.8) 		320.1
(-3) 		288.9
(-3) 		6674.8
(3) 		6386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1073
1 2 3 4 5 6 range
A 1134.6
(-0.5)
P 		757.3
(-3)
P 		892.8
(-2.1)
P 		898.4
(-2.1)
P 		1142.5
(-0.4)
P 		1658.6
(3)
P 		901
B 1094.2
(-0.8)
P 		767.5
(-3)
P 		801.3
(-2.8)
P 		1147.6
(-0.5)
P 		1075.2
(-0.9)
P 		1665.6
(3)
P 		898
C 1114.4
(-1.1)
P 		772.8
(-3)
P 		1105.1
(-1.1)
P 		920
(-2.2)
P 		1096.8
(-1.2)
P 		1830.3
(3)
P 		1058
avr 1114.4
(-0.8) 		765.9
(-3) 		933.1
(-1.9) 		988.7
(-1.6) 		1104.8
(-0.9) 		1718.2
(3) 		952
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1215
1 2 3 4 range
A 201.9
(-2.3)
P 		80.3
(-3)
P 		76.7
(-3)
M 		1090.2
(3)
P 		1014
B 175.6
(-2.4)
P 		62
(-3)
A 		66.8
(-3)
P 		1277.2
(3)
P 		1215
C 179.2
(-2.5)
P 		97.5
(-3)
P 		99.3
(-3)
P 		1110
(3)
P 		1013
avr 185.6
(-2.4) 		79.9
(-3) 		80.9
(-3) 		1159.1
(3) 		1079

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 209.2
(-2.6)
P 		269.3
(-0.9)
P 		194.4
(-3)
P 		227.9
(-2)
P 		344.8
(1.3)
P 		403.8
(3)
P 		209
B 380.7
(-0.4)
P 		255.5
(-2.1)
P 		194.6
(-3)
P 		304
(-1.5)
P 		436.9
(0.4)
P 		621.1
(3)
P 		427
C 413.1
(0.2)
P 		235.8
(-2.3)
P 		281.3
(-1.6)
P 		185
(-3)
P 		354.9
(-0.6)
P 		612.7
(3)
P 		428
avr 334.3
(-0.9) 		253.5
(-2.4) 		223.4
(-3) 		239
(-2.7) 		378.9
(-0.1) 		545.9
(3) 		323
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173480_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25714
Sequence Type Exemplar sequence
Representative Public ID C70215 NCBI
Target Description C70215 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y5H2B.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70215 /WB_GENE_ID=Y5H2B.5 /WP=CE26222 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk384e3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071197 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-32B1) (cyp-32B1) mRNA, complete cds. 11/11 None
SNAP00000028129 ENSEMBL cdna:SNAP chromosome:CEL140:V:2197914:2201005:-1 11/11 None
GENEFINDER00000028135 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2196717:2204211:-1 11/11 None
Y5H2B.5 ENSEMBL cdna:known chromosome:CEL140:V:2197895:2201235:-1 gene:Y5H2B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2197908-2201236(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cyp-32B1
Ensembl Y5H2B.5
Entrez Gene 178697 Entrez gene
SwissProt Q9N4Q5 EMBL-EBI
WormBase CE26222 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635727_A_AT dm
DROSGENOME1:152658_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503598 CYtochrome P450 family member (cyp-32B1) [Caenorhabditis elegans] gb|AAF59629.2| Cytochrome p450 family protein 32B1 [Caenorhabditis elegans] 0.0
blast CAE58167 Hypothetical protein CBG01258 [Caenorhabditis briggsae] 0.0
blast NP_503599 CYtochrome P450 family member (cyp-33C12) [Caenorhabditis elegans] gb|AAF59628.1| Cytochrome p450 family protein 33C12 [Caenorhabditis elegans] 0.0
blast AAB37074 Hypothetical protein C26F1.2 [Caenorhabditis elegans] ref|NP_505009.3| CYtochrome P450 family member (cyp-32A1) [Caenorhabditis elegans] 1.0E-131
Protein Families
Method ID Description E-Value
p450 CPA5_MOUSE Animalia; CYP2A-5; mou; CPA5_MOUSE; Mus musculus; P20852 1.0E-98
p450 CPA2_RAT Animalia; CYP2A2; rat; CPA2_RAT; Rattus sp.; P15149 9.0E-94
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 5.0E-106
Pfam IPR001128 EMBL-EBI Cytochrome P450 5.0E-106
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.1E-75
Pfam IPR001128 EMBL-EBI Cytochrome P450 5.0E-106
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.1E-10
Sequence
Target Sequence 
>C. ELEGANS:173480_S_AT
tcatgacacaacttcgtccgggataacatttgccgtctggtttttgggacaatttccaga
atatcagcagagagttcatgacgagctggatgagatctttggcgaggatttcgagcggat
tccgaattctgaggatattcagaaaatggtttatttggagcagtgtattaaggaaacgct
gcgaatgacgccgccggtaccatttgtgtcgaggaaattgacggaggatgttaaaattgc
tcacgccacaaaacctgaccttctactgccagccggaataaactgtatgatcaacattat
cacaattatgaaggacgcccgatatttcgaaagaccctatgagttcttcccggagcattt
ctccccagagagagtcgccgcacgagaaccattcgcattcgtcccattctcggcgggacc
ccgaaattgcatcggacaaaaattcgcgttactcgaagagaaagtcttgctctcctggat
tttccgcaactttaccgtcacctcaatgacaaaatttcccgaagaaatgccaattcccga
gctaattttgaagccgcagtttgggacacaggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGACACAACTTCGTCCGGGATA 89 623 964 Antisense
GGGATAACATTTGCCGTCTGGTTTT 216 495 983 Antisense
AGGAAACGCTGCGAATGACGCCGCC 297 55 1134 Antisense
CGCCGGTACCATTTGTGTCGAGGAA 232 255 1155 Antisense
TATGAGTTCTTCCCGGAGCATTTCT 379 657 1301 Antisense
GCATTTCTCCCCAGAGAGAGTCGCC 262 307 1318 Antisense
GCACGAGAACCATTCGCATTCGTCC 295 313 1343 Antisense
CATTCTCGGCGGGACCCCGAAATTG 213 159 1368 Antisense
TCTCCTGGATTTTCCGCAACTTTAC 135 611 1434 Antisense
GCAACTTTACCGTCACCTCAATGAC 558 317 1449 Antisense
AAGCCGCAGTTTGGGACACAGGTTC 611 109 1514 Antisense
Sequence Source Affymetrix Proprietary Database