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[173478_at]

Description g8037942 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F35G12.3B /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F35G12.3B /WP=CE00972 /CHR=3 /FEA=Genomic Cluster /DEF=SEL-5B serine-threonine kinase; serine-threonine kinase
Cluster 4grp_high_8_8 > 08      6grp_total > 58      4grp_total > 15      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 200
(3)
P 		71.8
(-2.6)
P 		63.2
(-3)
P 		109.8
(-1)
P 		137
B 159.5
(3)
P 		59.9
(-3)
P 		107.3
(-0.1)
P 		143.3
(2)
P 		100
C 140.5
(2.5)
P 		51.1
(-3)
A 		129.4
(1.8)
P 		148.4
(3)
P 		97
avr 166.7
(3) 		60.9
(-3) 		100
(-0.8) 		133.8
(1.1) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 186.1
(2)
P 		118.5
(-1.3)
P 		99.6
(-2.2)
P 		82.9
(-3)
A 		107.8
(-1.8)
P 		206.1
(3)
P 		123
B 144.2
(0.2)
P 		62.9
(-2.7)
P 		55.6
(-3)
P 		121.8
(-0.6)
M 		99.9
(-1.4)
P 		223.2
(3)
P 		168
C 95.2
(-2.7)
P 		120.7
(-1.7)
P 		90.2
(-2.8)
P 		85.9
(-3)
M 		128.1
(-1.4)
P 		247.3
(3)
P 		161
avr 141.8
(-0.5) 		100.7
(-2.2) 		81.8
(-3) 		96.9
(-2.4) 		111.9
(-1.7) 		225.5
(3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 72.8
(3)
P 		15.6
(-3)
P 		16.5
(-2.9)
P 		16.1
(-2.9)
P 		57
B 50.9
(3)
P 		14.8
(-3)
P 		24.9
(-1.3)
P 		30.5
(-0.4)
P 		36
C 46.5
(3)
P 		14.7
(-3)
A 		45.1
(2.7)
P 		25
(-1.1)
P 		32
avr 56.7
(3) 		15
(-3) 		28.8
(-1) 		23.9
(-1.7) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 34.3
(-0.3)
P 		42.1
(1.3)
P 		21.7
(-2.9)
P 		21
(-3)
A 		32.5
(-0.6)
P 		50.2
(3)
P 		29
B 50.2
(0.2)
P 		21
(-2.4)
P 		13.5
(-3)
P 		32.3
(-1.4)
M 		40.6
(-0.7)
P 		83.2
(3)
P 		70
C 35.3
(-1.4)
P 		36.8
(-1.2)
P 		23
(-2.5)
P 		17.3
(-3)
M 		41.4
(-0.8)
P 		82.8
(3)
P 		66
avr 39.9
(-0.7) 		33.3
(-1.4) 		19.4
(-3) 		23.5
(-2.5) 		38.2
(-0.9) 		72.1
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24135
Sequence Type Exemplar sequence
Representative Public ID 8037942 NCBI
Target Description g8037942 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F35G12.3B /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F35G12.3B /WP=CE00972 /CHR=3 /FEA=Genomic Cluster /DEF=SEL-5B serine-threonine kinase; serine-threonine kinase
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027392 NCBI Caenorhabditis elegans Suppressor/Enhancer of Lin-12 family member (sel-5) (sel-5) mRNA, complete cds. 11/11 None
F35G12.3b ENSEMBL cdna:known chromosome:CEL140:III:4571756:4578402:-1 gene:F35G12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175599 2 1 NM_001027391 173477_at (11), 190859_s_at (11)
NM_001027392 173478_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4574889-4578393(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35G12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86332 Hypothetical protein F35G12.3b [Caenorhabditis elegans] ref|NP_001022563.1| Suppressor/Enhancer of Lin-12 family member (sel-5) [Caenorhabditis elegans] gb|AAF71546.1| SEL-5B serine/threonine kinase [Caenorhabditis elegans] 0.0
blast CAA86326 Hypothetical protein F35G12.3a [Caenorhabditis elegans] ref|NP_001022562.1| Suppressor/Enhancer of Lin-12 family member (sel-5) [Caenorhabditis elegans] gb|AAF71545.1| SEL-5A serine/threonine kinase [Caenorhabditis elegans] 0.0
blast CAE71182 Hypothetical protein CBG18039 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.9E-36
Sequence
Target Sequence 
>C. ELEGANS:173478_AT
caagtttagatccccaaaatgctttgcatcttgccttttttggacataaaaactcatgaa
aacttaaaatccgcagaaatttgctttacttatcatttttcattttctctcccactttgc
ctggattactgtagaataggctcctccttcttttgacctttttcccaattcttatcgatg
ttgttcctgtgaaacgtatttatcgaatcggttacatattgttccattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTTTAGATCCCCAAAATGCTTT 326 177 2078 Antisense
AAATGCTTTGCATCTTGCCTTTTTT 334 119 2094 Antisense
GCATCTTGCCTTTTTTGGACATAAA 527 309 2103 Antisense
AAATCCGCAGAAATTTGCTTTACTT 266 117 2144 Antisense
GAAATTTGCTTTACTTATCATTTTT 522 363 2153 Antisense
CTCCCACTTTGCCTGGATTACTGTA 573 233 2186 Antisense
ATTACTGTAGAATAGGCTCCTCCTT 111 13 2202 Antisense
ACCTTTTTCCCAATTCTTATCGATG 470 87 2233 Antisense
TCTTATCGATGTTGTTCCTGTGAAA 514 615 2247 Antisense
GTTCCTGTGAAACGTATTTATCGAA 270 439 2260 Antisense
GAATCGGTTACATATTGTTCCATTT 197 327 2282 Antisense
Sequence Source GenBank