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[173475_s_at] Globin

Description g436274 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=ZK637.13 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=ZK637.13 /WP=CE00431 /CHR=3 /FEA=Genomic Cluster /GEN=globin /DEF=globin; Globin
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 17      6grp_total > 52      4grp_total > 29      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4791
1 2 3 4 range
A 10269.4
(3)
P 		7887.8
(-0.1)
P 		5714.1
(-3)
P 		9195.3
(1.6)
P 		4555
B 9432.4
(3)
P 		7852.7
(-0.1)
P 		6336.6
(-3)
P 		9133.4
(2.4)
P 		3096
C 10220.5
(3)
P 		8231.1
(0.5)
P 		5478.9
(-3)
P 		9277.1
(1.8)
P 		4742
avr 9974.1
(3) 		7990.5
(0.1) 		5843.2
(-3) 		9201.9
(1.9) 		4131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16877
1 2 3 4 5 6 range
A 7718.2
(-1.6)
P 		10286
(-0.7)
P 		20578
(3)
P 		13627.8
(0.5)
P 		6435.7
(-2)
P 		3701
(-3)
P 		16877
B 7769.6
(-1.4)
P 		10488.8
(-0.2)
P 		17708.5
(3)
P 		11798.1
(0.4)
P 		6968.1
(-1.8)
P 		4233.7
(-3)
P 		13475
C 6899.5
(-1.9)
P 		10747.6
(0.2)
P 		15892.7
(3)
P 		15003.7
(2.5)
P 		6685
(-2)
P 		4846.5
(-3)
P 		11046
avr 7462.4
(-1.6) 		10507.5
(-0.3) 		18059.7
(3) 		13476.5
(1) 		6696.3
(-1.9) 		4260.4
(-3) 		13799
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2393
1 2 3 4 range
A 3739.1
(3)
P 		1712.2
(-2.1)
P 		1493.8
(-2.6)
P 		1346
(-3)
P 		2393
B 3007.9
(3)
P 		1939.4
(-1.2)
P 		1468.3
(-3)
P 		1946.3
(-1.1)
P 		1540
C 3383.3
(3)
P 		2366.5
(-0.4)
P 		1909.6
(-1.9)
P 		1564.3
(-3)
P 		1819
avr 3376.8
(3) 		2006
(-1.7) 		1623.9
(-3) 		1618.9
(-3) 		1758

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3580
1 2 3 4 5 6 range
A 1422.8
(-2.1)
P 		3658.2
(1.6)
P 		4481.5
(3)
P 		3456.3
(1.3)
P 		1942
(-1.3)
P 		901.1
(-3)
P 		3580
B 2703.4
(-0.5)
P 		3491.3
(1.2)
P 		4300.1
(3)
P 		3124.9
(0.4)
P 		2831.1
(-0.2)
P 		1578.7
(-3)
P 		2721
C 2557.3
(-0.7)
P 		3279.4
(1.1)
P 		4045
(3)
P 		3017.3
(0.5)
P 		2163.2
(-1.7)
P 		1622.4
(-3)
P 		2423
avr 2227.8
(-1.2) 		3476.3
(1.4) 		4275.5
(3) 		3199.5
(0.8) 		2312.1
(-1.1) 		1367.4
(-3) 		2908
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173475_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24358
Sequence Type Exemplar sequence
Representative Public ID 436274 NCBI
Target Description g436274 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=ZK637.13 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=ZK637.13 /WP=CE00431 /CHR=3 /FEA=Genomic Cluster /GEN=globin /DEF=globin; Globin
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066573(10), S66164(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066573 NCBI Caenorhabditis elegans ZK637.13 (Globin) mRNA, complete cds. 10/11 None
S66164 NCBI Caenorhabditis elegans globin mRNA, complete cds. 10/11 None
SNAP00000013212 ENSEMBL cdna:SNAP chromosome:CEL140:III:8922411:8923188:-1 10/11 None
GENEFINDER00000013228 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8922411:8923194:-1 10/11 None
ZK637.13.2 ENSEMBL cdna:known chromosome:CEL140:III:8922303:8923202:-1 gene:ZK637.13 10/11 None
ZK637.13.1 ENSEMBL cdna:known chromosome:CEL140:III:8922303:8923194:-1 gene:ZK637.13 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8922322-8923185(-) 99.82 99.82
Public Domain and Genome References
Gene Title Globin
Ensembl ZK637.13
Entrez Gene 176261 Entrez gene
SwissProt P30627 EMBL-EBI
WormBase CE36418 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15671 oxygen transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T41748 globin - Caenorhabditis elegans 8.0E-91
blast CAA77458 Hypothetical protein ZK637.13 [Caenorhabditis elegans] emb|CAA79148.1| ORF1 [Caenorhabditis elegans] ref|NP_498974.2| ZK637.13 [Caenorhabditis elegans] gb|AAB28512.3| globin [Caenorhabditis elegans] sp|P30627|GLBH_CAEEL Globin-like protein 1.0E-89
blast T41748 globin - Caenorhabditis elegans 1.0E-89
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 0.0
Pfam IPR000971 EMBL-EBI Globin 1.6E-34
Pfam IPR000971 EMBL-EBI Globin 1.6E-34
Sequence
Target Sequence 
>C. ELEGANS:173475_S_AT
tgatctctgtgtgaagtcccttgaaggacgaatggttggaactgaggctcaaaacattga
gaatggaaacgccttcttccgttatttcttcaccaacttcccggatcttcgtgtctattt
caagggagccgagaagtacactgcagatgatgtgaagaagagtgagagatttgacaaaca
aggccaacgtattcttcttgcgtgccatctccttgccaacgtctacaccaatgaagaagt
cttcaagggatacgtccgtgaaaccatcaaccgtcatcgtatctacaaaatggatccagc
tctgtggatggcattcttcactgtattcactggatatcttgaatctgttggatgtctcaa
tgatcaacaaaaggccgcatggatggcacttggaaaggaattcaatgctgagagtcagac
acatctcaagaattccaatcttccacatgttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCTCTGTGTGAAGTCCCTTGAA 505 565 40 Antisense
GAATGGAAACGCCTTCTTCCGTTAT 311 333 100 Antisense
CCGGATCTTCGTGTCTATTTCAAGG 552 263 140 Antisense
GGGAGCCGAGAAGTACACTGCAGAT 55 495 163 Antisense
AAGGCCAACGTATTCTTCTTGCGTG 260 161 219 Antisense
CTTGCCAACGTCTACACCAATGAAG 616 217 251 Antisense
GAAACCATCAACCGTCATCGTATCT 389 359 299 Antisense
GGATCCAGCTCTGTGGATGGCATTC 485 513 331 Antisense
GATGGCATTCTTCACTGTATTCACT 337 407 346 Antisense
AAAGGCCGCATGGATGGCACTTGGA 374 121 409 Antisense
AGAATTCCAATCTTCCACATGTTTA 695 75 468 Antisense
Sequence Source GenBank