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[173474_at] ABC transporters (2 domains)

Description g695168 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=T27E9.7 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=T27E9.7 /WP=CE18971 /CHR=3 /FEA=Genomic Cluster /DEF=ABC transporters (2 domains)
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 77      6grp_total > 39      4grp_total > 04      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3063
1 2 3 4 range
A 1822.5
(-1.5)
P 		1238
(-3)
P 		1587.7
(-2.1)
P 		3570.5
(3)
P 		2333
B 2004.6
(-1.5)
P 		1293.2
(-3)
P 		1300.7
(-3)
P 		4105.9
(3)
P 		2813
C 1849.8
(-2.3)
P 		1508.8
(-3)
P 		1711.8
(-2.6)
P 		4300.8
(3)
P 		2792
avr 1892.3
(-1.8) 		1346.7
(-3) 		1533.4
(-2.6) 		3992.4
(3) 		2646

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1260
1 2 3 4 5 6 range
A 1379.3
(-0.1)
P 		1497.6
(0.8)
P 		1025.2
(-3)
P 		1363.3
(-0.3)
P 		1575.2
(1.5)
P 		1766.6
(3)
P 		741
B 1557
(3)
P 		1462.9
(2.4)
P 		662.7
(-3)
P 		1460.8
(2.4)
P 		1480
(2.5)
P 		1517.5
(2.7)
P 		894
C 1923.1
(3)
P 		1349.7
(-1.2)
P 		1112.1
(-3)
P 		1250
(-2)
P 		1781.3
(2)
P 		1422.3
(-0.7)
P 		811
avr 1619.8
(3) 		1436.7
(1.4) 		933.3
(-3) 		1358
(0.7) 		1612.2
(2.9) 		1568.8
(2.6) 		687
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 606
1 2 3 4 range
A 663.6
(3)
P 		268.7
(-3)
P 		415
(-0.8)
P 		522.6
(0.9)
P 		395
B 639.2
(0.5)
P 		319.4
(-2.8)
P 		301.4
(-3)
P 		875
(3)
P 		574
C 612.4
(0.7)
P 		433.8
(-3)
P 		596.6
(0.4)
P 		725.2
(3)
P 		291
avr 638.4
(1.9) 		340.6
(-3) 		437.7
(-1.4) 		707.6
(3) 		367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 552
1 2 3 4 5 6 range
A 254.3
(-2.4)
P 		532.6
(3)
P 		223.3
(-3)
P 		345.8
(-0.6)
P 		475.3
(1.9)
P 		430.1
(1)
P 		309
B 541.8
(2.2)
P 		486.9
(1.4)
P 		160.9
(-3)
P 		386.9
(0.1)
P 		601.3
(3)
P 		565.9
(2.5)
P 		440
C 712.8
(3)
P 		411.8
(-0.9)
P 		283.1
(-2.6)
P 		251.4
(-3)
P 		576.4
(1.2)
P 		476.1
(-0.1)
P 		461
avr 503
(2.1) 		477.1
(1.7) 		222.4
(-3) 		328
(-1.1) 		551
(3) 		490.7
(1.9) 		329
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23889
Sequence Type Exemplar sequence
Representative Public ID 695168 NCBI
Target Description g695168 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=T27E9.7 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=T27E9.7 /WP=CE18971 /CHR=3 /FEA=Genomic Cluster /DEF=ABC transporters (2 domains)
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067378 NCBI Caenorhabditis elegans T27E9.7 (T27E9.7) mRNA, complete cds. 11/11 None
T27E9.7.2 ENSEMBL cdna:known chromosome:CEL140:III:13457212:13462209:-1 gene:T27E9.7 11/11 A 
T27E9.7.1 ENSEMBL cdna:known chromosome:CEL140:III:13457212:13461754:-1 gene:T27E9.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
T27E9.7.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13457296-13461720(-) 100.0 100.0
Public Domain and Genome References
Gene Title ABC transporters (2 domains)
Ensembl T27E9.7
Entrez Gene 176771 Entrez gene
SwissProt Q9XTD9 EMBL-EBI
WormBase CE18971 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247593_AT ABC transporter family protein at
CANINE:1584907_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFA.11479.1.A1_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFA.17645.2.S1_S_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFA.8004.1.A1_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFAAFFX.16833.1.S1_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFAAFFX.8212.1.S1_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
CANINE_2:CFAAFFX.8212.1.S1_S_AT similar to ATP-binding cassette, sub-family F, member 2 isoform b cfa
DROSOPHILA_2:1639700_S_AT dm
DROSGENOME1:153481_AT dm
CHICKEN:GGAAFFX.13234.1.S1_AT ATP-binding cassette, sub-family F (GCN20), member 2 gga
CHICKEN:GGAAFFX.8504.2.S1_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 gga
CHICKEN:GGAAFFX.8504.3.S1_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 gga
CHICKEN:GGAAFFX.8504.4.S1_AT ATP-binding cassette, sub-family F (GCN20), member 2 gga
HG-U133A:207622_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:207622_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:207622_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A:209247_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:209247_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-FOCUS:209247_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:209247_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:209246_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A:209246_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:209246_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HU35KSUBA:U66678_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HU35KSUBD:RC_AA427460_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A:207623_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:207623_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:207623_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:G12804500_3P_A_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:G10947136_3P_X_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:G10947136_3P_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:G10179833_3P_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
U133_X3P:HS.153612.2.S1_3P_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A_2:214232_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133_PLUS_2:214232_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U133A:214232_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HG-U95AV2:31878_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
HU35KSUBA:W26980_AT ATP-binding cassette, sub-family F (GCN20), member 2 hs
MG-U74AV2:102010_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MU11KSUBB:MSA.3750.0_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MU11KSUBB:MSA.9318.0_S_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74AV2:93845_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74BV2:164938_F_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74CV2:168664_R_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74CV2:167611_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74CV2:169454_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MOE430A:1423863_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MOUSE430A_2:1423863_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MOUSE430_2:1423863_AT ATP-binding cassette, sub-family F (GCN20), member 2 mm
MG-U74CV2:168539_AT ATP-binding cassette, sub-family F (GCN20), member 2 (Abcf2), mRNA mm
MU19KSUBA:TC19960_AT ATP-binding cassette, sub-family F (GCN20), member 2 (Abcf2), mRNA mm
MU19KSUBB:TC31431_AT ATP-binding cassette, sub-family F (GCN20), member 2 (Abcf2), mRNA mm
RG-U34C:RC_AI235192_AT ATP-binding cassette, sub-family F (GCN20), member 2 (predicted) rn
RAE230A:1389608_AT ATP-binding cassette, sub-family F (GCN20), member 2 (predicted) rn
RAT230_2:1389608_AT ATP-binding cassette, sub-family F (GCN20), member 2 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21772 Hypothetical protein T27E9.7 [Caenorhabditis elegans] emb|CAB04880.1| Hypothetical protein T27E9.7 [Caenorhabditis elegans] ref|NP_499779.1| T27E9.7 [Caenorhabditis elegans] 0.0
blast CAE73687 Hypothetical protein CBG21198 [Caenorhabditis briggsae] 0.0
blast AAC46845 unknown 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 6.0E-38
Pfam IPR003439 EMBL-EBI ABC transporter 3.5E-39
Sequence
Target Sequence 
>C. ELEGANS:173474_AT
ttttcgttgtttttcctgttgattgtcctgtttctctcctttactattctactcgaagtc
tccattttattctttatttttttgatgaaaatttacttgttttcttattcctatttcccc
ccgaaaacatcgaaaatctgccaattctatattagaatcgaactgatttccgagattttt
ctctcattattcacctttccccccattttcaatttaggatatttcaatttcattttcctg
tgattttgattatattttctcttgttttcattcatcttttactctctttgacccaatttt
tgtcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCGTTGTTTTTCCTGTTGATTG 624 673 1894 Antisense
CTCTCCTTTACTATTCTACTCGAAG 59 231 1927 Antisense
TATTCTACTCGAAGTCTCCATTTTA 18 665 1938 Antisense
GAAGTCTCCATTTTATTCTTTATTT 551 335 1948 Antisense
ATCGAAAATCTGCCAATTCTATATT 131 37 2022 Antisense
GAATCGAACTGATTTCCGAGATTTT 67 329 2048 Antisense
GAGATTTTTCTCTCATTATTCACCT 500 397 2065 Antisense
TCCCCCCATTTTCAATTTAGGATAT 651 593 2091 Antisense
TCTTGTTTTCATTCATCTTTTACTC 246 619 2153 Antisense
TCATTCATCTTTTACTCTCTTTGAC 245 619 2161 Antisense
CTCTCTTTGACCCAATTTTTGTCGG 301 231 2175 Antisense
Sequence Source GenBank