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[173470_s_at]

Description g9049537 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=H19N07.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=H19N07.4 /WP=CE16185 /CHR=5 /FEA=Genomic Cluster /DEF=diacylglycerol acyltransferase
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 37      4grp_high_8_8 > 0      6grp_highest_nonorm > 78      6grp_total > 68      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1212
1 2 3 4 range
A 1221.3
(-3)
P 		1600.6
(0.1)
P 		1957.8
(3)
P 		1807.4
(1.8)
P 		737
B 1941.5
(0.1)
P 		1425.5
(-3)
P 		1531.9
(-2.4)
P 		2433
(3)
P 		1008
C 2423.8
(3)
P 		1318.5
(-3)
P 		1834.6
(-0.2)
P 		1917.9
(0.3)
P 		1105
avr 1862.2
(1.1) 		1448.2
(-3) 		1774.8
(0.2) 		2052.8
(3) 		605

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1152
1 2 3 4 5 6 range
A 1858.7
(2.2)
P 		1611.5
(-0.3)
P 		1343.6
(-3)
P 		1350.4
(-2.9)
P 		1847.1
(2.1)
P 		1932.8
(3)
P 		589
B 1028.5
(-3)
P 		1800.6
(1.1)
P 		1407
(-1)
P 		1343.1
(-1.3)
P 		1254.5
(-1.8)
P 		2157.9
(3)
P 		1129
C 1580.5
(-0)
P 		1595.9
(0.1)
P 		1456.7
(-0.7)
P 		1006.1
(-3)
P 		1498.8
(-0.4)
P 		2157.6
(3)
P 		1152
avr 1489.2
(-1.2) 		1669.3
(0.1) 		1402.4
(-1.8) 		1233.2
(-3) 		1533.5
(-0.9) 		2082.8
(3) 		850
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 538
1 2 3 4 range
A 444.7
(1.4)
P 		347.4
(-1)
P 		511.8
(3)
P 		264.6
(-3)
P 		247
B 619.1
(3)
P 		352.1
(-3)
P 		355
(-2.9)
P 		518.5
(0.7)
P 		267
C 802.3
(3)
P 		379.1
(-2.3)
P 		639.4
(1)
P 		323.4
(-3)
P 		479
avr 622
(3) 		359.5
(-3) 		502.1
(0.3) 		368.8
(-2.8) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 602
1 2 3 4 5 6 range
A 342.6
(-1.9)
P 		573.1
(3)
P 		292.6
(-3)
P 		342.5
(-1.9)
P 		557.4
(2.7)
P 		470.6
(0.8)
P 		281
B 357.9
(-2.8)
P 		599.4
(0.3)
P 		341.7
(-3)
P 		355.7
(-2.8)
P 		509.7
(-0.8)
P 		804.7
(3)
P 		463
C 585.8
(1.4)
P 		487
(0.3)
P 		370.7
(-1.1)
P 		202.3
(-3)
P 		485
(0.3)
P 		722.3
(3)
P 		520
avr 428.8
(-0.9) 		553.2
(1.2) 		335
(-2.4) 		300.2
(-3) 		517.4
(0.6) 		665.9
(3) 		366
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173470_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25422
Sequence Type Exemplar sequence
Representative Public ID 9049537 NCBI
Target Description g9049537 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=H19N07.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=H19N07.4 /WP=CE16185 /CHR=5 /FEA=Genomic Cluster /DEF=diacylglycerol acyltransferase
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073427 NCBI Caenorhabditis elegans H19N07.4 (H19N07.4) mRNA, complete cds. 11/11 A 
H19N07.4.2 ENSEMBL cdna:known chromosome:CEL140:V:11122410:11125117:-1 gene:H19N07.4 11/11 None
H19N07.4.1 ENSEMBL cdna:known chromosome:CEL140:V:11122410:11125081:-1 gene:H19N07.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11122475-11125057(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H19N07.4
Entrez Gene 179540 Entrez gene
SwissProt O45245 EMBL-EBI
WormBase CE16185 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:267280_AT diacylglycerol O-acyltransferase / acyl CoA:diacylglycerol acyltransferase (DGAT) at
CANINE:1584419_AT similar to Diacylglycerol O-acyltransferase 1 (Diglyceride acyltransferase) (ACAT related gene product 1) cfa
CANINE_2:CFA.11327.1.A1_AT similar to Diacylglycerol O-acyltransferase 1 (Diglyceride acyltransferase) (ACAT related gene product 1) cfa
CANINE_2:CFA.11327.1.A1_S_AT similar to Diacylglycerol O-acyltransferase 1 (Diglyceride acyltransferase) (ACAT related gene product 1) cfa
DROSOPHILA_2:1636579_S_AT midway dm
DROSGENOME1:154661_AT midway dm
DROSGENOME1:146381_AT midway dm
HG-U133_PLUS_2:203669_S_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HG-U133A_2:203669_S_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HG-U133A:203669_S_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HG-FOCUS:203669_S_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HU35KSUBA:RC_AA478001_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
U133_X3P:G7382489_3P_A_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
HG-U95AV2:34255_AT diacylglycerol O-acyltransferase homolog 1 (mouse) hs
MOUSE430_2:1445229_AT diacylglycerol O-acyltransferase 1 mm
MOE430B:1445229_AT diacylglycerol O-acyltransferase 1 mm
MU11KSUBA:C76527_RC_G_AT diacylglycerol O-acyltransferase 1 mm
MU11KSUBA:C76527_RC_AT diacylglycerol O-acyltransferase 1 mm
MG-U74AV2:104371_AT diacylglycerol O-acyltransferase 1 mm
MG-U74AV2:162316_F_AT diacylglycerol O-acyltransferase 1 mm
MOE430A:1418295_S_AT diacylglycerol O-acyltransferase 1 mm
MOUSE430A_2:1418295_S_AT diacylglycerol O-acyltransferase 1 mm
MOUSE430_2:1418295_S_AT diacylglycerol O-acyltransferase 1 mm
RG-U34A:RC_AA859529_AT diacylglycerol O-acyltransferase 1 rn
RAE230A:1367915_AT diacylglycerol O-acyltransferase 1 rn
RAT230_2:1367915_AT diacylglycerol O-acyltransferase 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4519 endonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF82410 diacylglycerol acyltransferase [Caenorhabditis elegans] 0.0
blast CAA99773 Hypothetical protein H19N07.4 [Caenorhabditis elegans] emb|CAB07399.1| Hypothetical protein H19N07.4 [Caenorhabditis elegans] ref|NP_505828.3| H19N07.4 [Caenorhabditis elegans] 0.0
blast CAE75170 Hypothetical protein CBG23107 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 2.6E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505828.3 9 69-86,112-134,147-169,179-201,284-303,333-355,404-423,427-446,459-481
H19N07.4.2 9 69-86,112-134,147-169,179-201,284-303,333-355,404-423,427-446,459-481
H19N07.4.1 9 69-86,112-134,147-169,179-201,284-303,333-355,404-423,427-446,459-481
Sequence
Target Sequence 
>C. ELEGANS:173470_S_AT
accgttggtatttgatttatctcaatttgtttttttttaattagcagttctctagtctta
ctacaagttttttattataatcattatattgcatgttgccaaattatctcaaaattccta
tttatatttttcatgtattacaggtcgttttcttatttttctcgtctctcacatacgttt
gctcacacttttgaaacatatttagtgccatttattaccaccttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGTTGGTATTTGATTTATCTCAA 351 87 1490 Antisense
TAATTAGCAGTTCTCTAGTCTTACT 342 633 1527 Antisense
GCAGTTCTCTAGTCTTACTACAAGT 482 311 1533 Antisense
TCTAGTCTTACTACAAGTTTTTTAT 64 615 1540 Antisense
TAATCATTATATTGCATGTTGCCAA 643 633 1567 Antisense
GCATGTTGCCAAATTATCTCAAAAT 530 309 1580 Antisense
ATGTATTACAGGTCGTTTTCTTATT 16 45 1622 Antisense
TCACATACGTTTGCTCACACTTTTG 523 627 1658 Antisense
ACGTTTGCTCACACTTTTGAAACAT 227 95 1664 Antisense
TTTGAAACATATTTAGTGCCATTTA 199 653 1679 Antisense
TAGTGCCATTTATTACCACCTTGCC 30 655 1692 Antisense
Sequence Source GenBank