[Home] | [Total List]

[173469_s_at] aromatic-L-amino-acid decarboxylase

Description g11169 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=ZK829.2 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=ZK829.2 /WP=CE06650 /CHR=4 /FEA=Genomic Cluster /DEF=aromatic-L-amino-acid decarboxylase
Cluster 6grp_high1_10_10 > 90      6grp_total > 49      4grp_total > 16      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 37.9
(-3)
A 		53.9
(-1.8)
A 		65.3
(-0.9)
A 		116.5
(3)
P 		79
B 88
(3)
P 		79
(2.1)
P 		69.9
(1.1)
A 		30.3
(-3)
M 		58
C 55.1
(-3)
P 		73.1
(-1.8)
M 		82.9
(-1.1)
A 		142.8
(3)
P 		88
avr 60.3
(-3) 		68.7
(-1.6) 		72.7
(-0.9) 		96.5
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 101.6
(3)
M 		16.6
(-3)
A 		54.5
(-0.3)
P 		59.3
(0)
A 		86.6
(1.9)
P 		93.5
(2.4)
P 		85
B 51.2
(-1.7)
A 		84.5
(0.9)
M 		35.9
(-2.9)
A 		34.6
(-3)
A 		103.1
(2.4)
P 		111
(3)
P 		76
C 72.8
(-0.7)
P 		108.3
(3)
P 		55.4
(-2.6)
A 		85.9
(0.6)
P 		51.4
(-3)
A 		66.1
(-1.4)
P 		57
avr 75.2
(0.8) 		69.8
(0.1) 		48.6
(-3) 		59.9
(-1.4) 		80.4
(1.6) 		90.2
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 13.8
(-0.7)
A 		11.7
(-3)
A 		17.1
(3)
A 		17.1
(3)
P 		5
B 28.1
(3)
P 		19.5
(0.6)
P 		16.2
(-0.3)
A 		6.5
(-3)
M 		22
C 18.2
(-3)
P 		21
(-1.4)
M 		28.9
(3)
A 		24.1
(0.3)
P 		11
avr 20
(2.1) 		17.4
(-1.1) 		20.7
(3) 		15.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 18.7
(0.8)
M 		5.9
(-3)
A 		11.9
(-1.2)
P 		15
(-0.3)
A 		26.1
(3)
P 		22.8
(2)
P 		20
B 17.8
(-1.4)
A 		28.1
(0.5)
M 		8.7
(-3)
A 		9.2
(-2.9)
A 		41.9
(3)
P 		41.4
(2.9)
P 		33
C 27
(1.1)
P 		33
(3)
P 		14.1
(-3)
A 		17.3
(-2)
P 		16.6
(-2.2)
A 		22.1
(-0.5)
P 		19
avr 21.2
(0.3) 		22.3
(0.7) 		11.6
(-3) 		13.8
(-2.2) 		28.2
(2.8) 		28.8
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173469_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24653
Sequence Type Exemplar sequence
Representative Public ID 11169 NCBI
Target Description g11169 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=ZK829.2 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=ZK829.2 /WP=CE06650 /CHR=4 /FEA=Genomic Cluster /DEF=aromatic-L-amino-acid decarboxylase
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069864 NCBI Caenorhabditis elegans Histidine Decarboxyase Like family member (hdl-1) (hdl-1) mRNA, complete cds. 11/11 None
SNAP00000012761 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11946076:11952140:-1 11/11 None
GENEFINDER00000012777 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11946076:11949734:-1 11/11 None
ZK829.2 ENSEMBL cdna:known chromosome:CEL140:IV:11946045:11949436:-1 gene:ZK829.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11946082-11949427(-) 100.0 100.0
Public Domain and Genome References
Gene Title aromatic-L-amino-acid decarboxylase
Gene Symbol hdl-1
Ensembl ZK829.2
Entrez Gene 178129 Entrez gene
SwissProt P34751 EMBL-EBI
WormBase CE06650 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6520 amino acid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16831 carboxy-lyase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98072 Hypothetical protein ZK829.2 [Caenorhabditis elegans] ref|NP_502265.1| Histidine Decarboxyase Like family member (hdl-1) [Caenorhabditis elegans] sp|P34751|DDC_CAEEL Probable aromatic-L-amino-acid decarboxylase (AADC) (DOPA decarboxylase) (DDC) 0.0
blast CAE62152 Hypothetical protein CBG06198 [Caenorhabditis briggsae] 0.0
blast CAA77663 aromatic-L-amino acid decarboxylase [Caenorhabditis elegans] prf||1908379A Dopa decarboxylase 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173469_S_AT
catgattcgttcttttggcgtcgaaaatctacaaaatcaaatcagagagcacataagatt
aggacaagttatgacaaaaatactgcaaaaagacttgagattcgaagtttgtaacaaagt
cgtgatggggttgatttgcttccgtgcaaaatcgaatgatatgttcaacaaagcactttt
gtacagatgcaatgaaacgggaaatgttagcttggcatcgtgcgtcttacaaaacaaatt
tgtcatccgaatgtgcataaactctccaaagtgttcagaggaagatctcgattcagctta
taaattgatttgcaatgaatacgatattttgaaagcgtttcaatatcgaattgaagtaat
gaatcaagcagagctcgaaacctttattcgcgatccagcaaaaatccactcgtctgccga
agtttctcgtcgcttcccagttgtaaatccattagagccgtgtcgaagtcttgctcaaat
ttcctcgcaaatgcacactgctgaatatgcagatccgccaggaaaaagcaacaaatcgcc
tcaagtagctgcaaaaggcgagctaccatctgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGATTCGTTCTTTTGGCGTCGAA 151 211 1876 Antisense
TGATGGGGTTGATTTGCTTCCGTGC 473 567 1998 Antisense
TTAGCTTGGCATCGTGCGTCTTACA 506 681 2082 Antisense
CCGAATGTGCATAAACTCTCCAAAG 250 263 2122 Antisense
GCTCGAAACCTTTATTCGCGATCCA 321 299 2248 Antisense
TCCAGCAAAAATCCACTCGTCTGCC 124 591 2269 Antisense
TCGCTTCCCAGTTGTAAATCCATTA 81 599 2305 Antisense
AGCCGTGTCGAAGTCTTGCTCAAAT 529 83 2331 Antisense
TTTCCTCGCAAATGCACACTGCTGA 178 669 2355 Antisense
AACAAATCGCCTCAAGTAGCTGCAA 342 135 2405 Antisense
GCAAAAGGCGAGCTACCATCTGCGG 406 319 2426 Antisense
Sequence Source GenBank