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[173468_at]

Description g3258650 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=D1022.7 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=D1022.7 /WP=CE02581 /CHR=2 /FEA=Genomic Cluster /GEN=kap-1 /DEF=A kinase anchor protein
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 97      6grp_total > 67      4grp_total > 15      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 626
1 2 3 4 range
A 927.7
(1.9)
P 		536.5
(-3)
P 		653.9
(-1.5)
P 		1019.2
(3)
P 		483
B 1092.7
(2.6)
P 		578.5
(-3)
P 		645
(-2.3)
P 		1125.3
(3)
P 		547
C 914.4
(2.6)
P 		498.9
(-3)
P 		797.4
(1)
P 		945.1
(3)
P 		446
avr 978.3
(2.4) 		538
(-3) 		698.8
(-1) 		1029.9
(3) 		492

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 704
1 2 3 4 5 6 range
A 905.1
(-2.5)
P 		923.5
(-2.3)
P 		868.4
(-3)
P 		897.4
(-2.6)
P 		1045.5
(-0.8)
P 		1343.2
(3)
P 		475
B 1114.9
(0.2)
P 		909.9
(-2)
P 		929.6
(-1.8)
P 		1079.9
(-0.2)
P 		812.5
(-3)
P 		1383.1
(3)
P 		571
C 887.7
(-2.5)
P 		874.9
(-2.6)
P 		832.8
(-3)
P 		1094.2
(-0.7)
P 		840.2
(-2.9)
P 		1516.1
(3)
P 		683
avr 969.2
(-2) 		902.8
(-2.7) 		876.9
(-3) 		1023.8
(-1.4) 		899.4
(-2.7) 		1414.1
(3) 		537
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 337.8
(3)
P 		116.5
(-3)
P 		170.9
(-1.5)
P 		149.2
(-2.1)
P 		221
B 348.5
(3)
P 		142.9
(-3)
P 		149.5
(-2.8)
P 		239.8
(-0.2)
P 		206
C 302.7
(3)
P 		143.4
(-3)
P 		277.9
(2.1)
P 		159.4
(-2.4)
P 		159
avr 329.7
(3) 		134.3
(-3) 		199.4
(-1) 		182.8
(-1.5) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 166.8
(-3)
P 		328.4
(3)
P 		189.1
(-2.2)
P 		227.6
(-0.7)
P 		315.5
(2.5)
P 		327
(2.9)
P 		162
B 387.9
(0.4)
P 		302.9
(-1.4)
P 		225.7
(-3)
P 		286
(-1.8)
P 		330.1
(-0.8)
P 		515.7
(3)
P 		290
C 329
(-0.6)
P 		267
(-1.9)
P 		212
(-3)
P 		220
(-2.8)
P 		271.9
(-1.8)
P 		507.5
(3)
P 		296
avr 294.6
(-0.9) 		299.4
(-0.7) 		208.9
(-3) 		244.5
(-2.1) 		305.8
(-0.6) 		450.1
(3) 		241
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173468_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23746
Sequence Type Exemplar sequence
Representative Public ID 3258650 NCBI
Target Description g3258650 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=D1022.7 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=D1022.7 /WP=CE02581 /CHR=2 /FEA=Genomic Cluster /GEN=kap-1 /DEF=A kinase anchor protein
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026874 NCBI Caenorhabditis elegans A Kinase Anchor protein family member (aka-1) (aka-1) mRNA, complete cds. 11/11 None
D1022.7a ENSEMBL cdna:known chromosome:CEL140:II:7472660:7478465:-1 gene:D1022.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174216 3 1 NM_001026874 173468_at (11), 183889_s_at (11)
NM_063164 183889_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7472682-7478458(-) 100.0 100.0
Public Domain and Genome References
Ensembl D1022.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022045 A Kinase Anchor protein family member (aka-1) [Caenorhabditis elegans] gb|AAB93340.1| A kinase anchor protein protein 1, isoform a [Caenorhabditis elegans] gb|AAC24507.1| A kinase anchor protein [Caenorhabditis elegans] 0.0
blast NP_495565 A Kinase Anchor protein family member (aka-1) [Caenorhabditis elegans] gb|AAM98040.1| A kinase anchor protein protein 1, isoform b [Caenorhabditis elegans] 0.0
blast CAE67531 Hypothetical protein CBG13053 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 2.7E-30
Sequence
Target Sequence 
>C. ELEGANS:173468_AT
gctcttccaatctgaaacctttcgatccaaattgaaacatttttctgttgcccattttcc
taagagatttccatatatttcattacaatgtgcaatcacccacttttaaccttttttttg
tagaatgcatccatttttactagtctctctttagacattctcaacgcttattcgtgtatc
caaatcctgtgatacttattccatttttcttgtagtccccaaaacactccatctcacttc
taacacattttatactaatcatgatcgattttcttctcggagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTTCCAATCTGAAACCTTTCGA 150 297 3842 Antisense
GAAACATTTTTCTGTTGCCCATTTT 369 355 3875 Antisense
TGCCCATTTTCCTAAGAGATTTCCA 509 583 3890 Antisense
GAGATTTCCATATATTTCATTACAA 438 397 3905 Antisense
TGTGCAATCACCCACTTTTAACCTT 34 557 3930 Antisense
ATGCATCCATTTTTACTAGTCTCTC 547 43 3966 Antisense
ACTAGTCTCTCTTTAGACATTCTCA 702 101 3980 Antisense
TTAGACATTCTCAACGCTTATTCGT 651 659 3992 Antisense
GCTTATTCGTGTATCCAAATCCTGT 592 303 4007 Antisense
TCCATCTCACTTCTAACACATTTTA 449 591 4069 Antisense
TCATGATCGATTTTCTTCTCGGAGG 443 621 4100 Antisense
Sequence Source GenBank