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[173467_s_at] Galactosyltransferase

Description g4008388 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=R10E11.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=R10E11.4 /WP=CE00306 /CHR=3 /FEA=Genomic Cluster /GEN=sqv-3 /DEF=Galactosyltransferase
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 97      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 92      6grp_total > 86      4grp_total > 16      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 210.7
(-3)
P 		259.2
(2.9)
P 		216.6
(-2.3)
P 		260.4
(3)
P 		50
B 232.2
(-0)
P 		226.9
(-3)
P 		237.6
(3)
P 		233
(0.4)
P 		11
C 196.4
(-3)
P 		203.6
(-2.6)
P 		245.8
(-0.1)
P 		298.9
(3)
P 		103
avr 213.1
(-3) 		229.9
(-1) 		233.3
(-0.6) 		264.1
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 228
(-0.8)
P 		172
(-3)
P 		234.4
(-0.6)
P 		245.9
(-0.1)
P 		326.4
(3)
P 		282.6
(1.3)
P 		154
B 152.9
(-3)
P 		229.3
(-1.1)
P 		178.5
(-2.4)
P 		302.5
(0.6)
P 		299
(0.6)
P 		399.3
(3)
P 		246
C 147.4
(-3)
P 		224.9
(-1.5)
P 		213.2
(-1.7)
P 		295.2
(-0.1)
P 		277.9
(-0.4)
P 		453
(3)
P 		306
avr 176.1
(-3) 		208.7
(-2) 		208.7
(-2) 		281.2
(0.1) 		301.1
(0.7) 		378.3
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 76.7
(3)
P 		56.3
(-0.2)
P 		56.6
(-0.1)
P 		38.1
(-3)
P 		39
B 74.1
(3)
P 		56
(-1.5)
P 		55.1
(-1.7)
P 		49.7
(-3)
P 		24
C 65
(-0.5)
P 		58.5
(-1.6)
P 		85.7
(3)
P 		50.4
(-3)
P 		35
avr 71.9
(3) 		56.9
(-0.5) 		65.8
(1.6) 		46.1
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 42
(-3)
P 		61.2
(-1)
P 		51
(-2)
P 		62.4
(-0.8)
P 		98.5
(3)
P 		68.8
(-0.2)
P 		57
B 53.2
(-2.4)
P 		76.3
(-1.1)
P 		43.4
(-3)
P 		80.1
(-0.9)
P 		121.5
(1.4)
P 		148.9
(3)
P 		106
C 54.6
(-3)
P 		68.6
(-2.1)
P 		54.3
(-3)
P 		59.4
(-2.7)
P 		89.9
(-0.8)
P 		151.6
(3)
P 		97
avr 49.9
(-3) 		68.7
(-1.4) 		49.6
(-3) 		67.3
(-1.6) 		103.3
(1.4) 		123.1
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173467_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24093
Sequence Type Exemplar sequence
Representative Public ID 4008388 NCBI
Target Description g4008388 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=R10E11.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=R10E11.4 /WP=CE00306 /CHR=3 /FEA=Genomic Cluster /GEN=sqv-3 /DEF=Galactosyltransferase
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066763 NCBI Caenorhabditis elegans R10E11.4 (Galactosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000016239 ENSEMBL cdna:SNAP chromosome:CEL140:III:9778940:9780095:-1 11/11 None
GENEFINDER00000016255 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9778940:9780203:-1 11/11 None
R10E11.4 ENSEMBL cdna:known chromosome:CEL140:III:9778515:9780243:-1 gene:R10E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9778936-9780200(-) 100.0 100.0
Public Domain and Genome References
Gene Title Galactosyltransferase
Gene Symbol sqv-3
Ensembl R10E11.4
Entrez Gene 176382 Entrez gene
SwissProt P34548 EMBL-EBI
WormBase CE00306 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20825.1.S1_S_AT similar to Beta-1,4-galactosyltransferase 7 (Beta-1,4-GalTase 7) (Beta4Gal-T7) (b4Gal-T7) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 7) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 7) cfa
CANINE_2:CFAAFFX.1312.1.S1_AT similar to Beta-1,4-galactosyltransferase 7 (Beta-1,4-GalTase 7) (Beta4Gal-T7) (b4Gal-T7) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 7) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 7) cfa
CANINE_2:CFAAFFX.1312.1.S1_S_AT similar to Beta-1,4-galactosyltransferase 7 (Beta-1,4-GalTase 7) (Beta4Gal-T7) (b4Gal-T7) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 7) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 7) cfa
DROSOPHILA_2:1632917_AT 4-galactosyltransferase 7 dm
DROSGENOME1:150544_AT 4-galactosyltransferase 7 dm
HG-FOCUS:53076_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HG-U133A_2:53076_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HG-U133_PLUS_2:53076_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HG-U133A:53076_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HG-U95B:53076_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HU35KSUBC:RC_W57807_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HU35KSUBC:RC_D81171_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
U133_X3P:4873394C_3P_S_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HG-U133A_2:222191_S_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HG-U133_PLUS_2:222191_S_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HG-U133A:222191_S_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
HG-U95B:46447_AT xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) hs
MOUSE430_2:1426304_X_AT xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) mm
MOE430A:1426304_X_AT xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) mm
MOUSE430A_2:1426304_X_AT xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) mm
MOUSE430A_2:1426303_AT xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) mm
MOUSE430_2:1426303_AT xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) mm
MOE430A:1426303_AT xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) mm
MG-U74BV2:110689_AT xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) mm
RAE230B:1379289_AT xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) (predicted) rn
RAT230_2:1379289_AT xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16757 transferase activity, transferring glycosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82350 Hypothetical protein R10E11.4 [Caenorhabditis elegans] ref|NP_499164.1| R10E11.4 [Caenorhabditis elegans] sp|P34548|SQV3_CAEEL Probable galactosyltransferase sqv-3 (Squashed vulva protein 3) emb|CAA06744.1| Sqv-3 protein [Caenorhabditis elegans] 1.0E-171
blast CAA82350 Hypothetical protein R10E11.4 [Caenorhabditis elegans] ref|NP_499164.1| R10E11.4 [Caenorhabditis elegans] sp|P34548|SQV3_CAEEL Probable galactosyltransferase sqv-3 (Squashed vulva protein 3) emb|CAA06744.1| Sqv-3 protein [Caenorhabditis elegans] 1.0E-152
blast CAE65107 Hypothetical protein CBG09970 [Caenorhabditis briggsae] 1.0E-145
blast CAE65107 Hypothetical protein CBG09970 [Caenorhabditis briggsae] 1.0E-134
blast EAL27617 GA11195-PA [Drosophila pseudoobscura] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003859 EMBL-EBI Metazoa galactosyltransferase 1.0E-126
Pfam IPR003859 EMBL-EBI Metazoa galactosyltransferase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499164.1 1 7-29
R10E11.4 1 7-29
GENEFINDER00000016255 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:173467_S_AT
aaacgtctctcatcacattttaatcatcaatcaaacggatcctcttcgatttaatagagc
ttctctaataaaggttggctggaacgaagcagatcgtcttggatgtgactacatggtgat
gaacgatgtagatctgttgcctgtcaatccagaagttccgtacgattttccgggaatcgg
tgtgattcggcacataacctctccccagtatcatccgaaatatcactatgaaaagtttat
cggaggaatattgatgctgacactgaaagattacaaaaaactaaatggaatgtcgaataa
gtattggggatggggacttgaagacgatgagttttatctcagaattagcgacagcaagct
caatctaactcgagtttctggtctatcaacagatagttcaaacacttttcggcatattca
tggaccaaaaagaaaaagagattatactccaaagaaaaatgataagaatcaatgggagat
taaacggaaaagagatcaggtatccggtctccacgacgtccgctacctcatcgatagtcg
ccaactcctcgacttttctggaacttcagttaccattatcaatgtcgccttacactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGTCTCTCATCACATTTTAATC 438 127 253 Antisense
ATCAAACGGATCCTCTTCGATTTAA 635 25 282 Antisense
AGCAGATCGTCTTGGATGTGACTAC 530 77 340 Antisense
GTAGATCTGTTGCCTGTCAATCCAG 249 457 380 Antisense
TCCAGAAGTTCCGTACGATTTTCCG 148 591 400 Antisense
GTGTGATTCGGCACATAACCTCTCC 553 487 432 Antisense
TCTCCCCAGTATCATCCGAAATATC 469 611 452 Antisense
CTAACTCGAGTTTCTGGTCTATCAA 60 227 617 Antisense
TAGTTCAAACACTTTTCGGCATATT 459 651 646 Antisense
GGAACTTCAGTTACCATTATCAATG 592 529 812 Antisense
CATTATCAATGTCGCCTTACACTGC 267 215 826 Antisense
Sequence Source GenBank