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[173466_s_at]

Description g3002910 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=C36H8.3 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=C36H8.3 /WP=CE05382 /CHR=4 /FEA=Genomic Cluster /GEN=flp-9 /DEF=FMRFamide-like peptide 9
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 26      6grp_total > 30      4grp_total > 13      6grp_highest_sub > 04      6grp_cgc > 94      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7583
1 2 3 4 range
A 6279.8
(-0.1)
P 		4104.2
(-2)
P 		2968.9
(-3)
P 		9749.6
(3)
P 		6781
B 6371.1
(0.5)
P 		3515.4
(-1.9)
P 		2242.5
(-3)
P 		9226.5
(3)
P 		6984
C 6101.1
(-0.1)
P 		3632.3
(-2.2)
P 		2624.1
(-3)
P 		9825.9
(3)
P 		7202
avr 6250.7
(0.1) 		3750.6
(-2) 		2611.8
(-3) 		9600.7
(3) 		6989

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4095
1 2 3 4 5 6 range
A 5127.4
(-1.8)
P 		6926.6
(1.3)
P 		5555.2
(-1)
P 		7930.6
(3)
P 		4404.6
(-3)
P 		5687.1
(-0.8)
P 		3526
B 4045.2
(-3)
P 		5547.7
(3)
P 		4421.3
(-1.5)
P 		4904.4
(0.4)
P 		4251.4
(-2.2)
P 		4303.7
(-2)
P 		1503
C 6271.3
(1.2)
P 		5435.1
(-0.2)
P 		7291.5
(3)
P 		7036.3
(2.6)
P 		5647.6
(0.1)
P 		3835.9
(-3)
P 		3456
avr 5148
(-1.4) 		5969.8
(1.1) 		5756
(0.4) 		6623.8
(3) 		4767.9
(-2.5) 		4608.9
(-3) 		2015
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1767
1 2 3 4 range
A 2286.5
(3)
P 		890.9
(-2.5)
P 		776.1
(-3)
P 		1427.1
(-0.4)
P 		1510
B 2031.7
(3)
P 		868.2
(-1.6)
P 		519.6
(-3)
P 		1966.2
(2.7)
P 		1512
C 2019.6
(3)
P 		1044.3
(-2.3)
P 		914.6
(-3)
P 		1656.8
(1)
P 		1105
avr 2112.6
(3) 		934.5
(-2.1) 		736.8
(-3) 		1683.4
(1.1) 		1376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1518
1 2 3 4 5 6 range
A 945.2
(-3)
P 		2463.4
(3)
P 		1209.8
(-2)
P 		2011.4
(1.2)
P 		1329.1
(-1.5)
P 		1384.6
(-1.3)
P 		1518
B 1407.5
(-0.4)
P 		1846.6
(3)
P 		1073.6
(-3)
P 		1299
(-1.3)
P 		1727.3
(2.1)
P 		1604.8
(1.1)
P 		773
C 2324.5
(3)
P 		1658.4
(-0.8)
P 		1855.8
(0.3)
P 		1415
(-2.2)
P 		1827.5
(0.1)
P 		1284.1
(-3)
P 		1040
avr 1559.1
(-1.2) 		1989.5
(3) 		1379.7
(-3) 		1575.1
(-1.1) 		1628
(-0.6) 		1424.5
(-2.6) 		610
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173466_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24771
Sequence Type Exemplar sequence
Representative Public ID 3002910 NCBI
Target Description g3002910 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=C36H8.3 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=C36H8.3 /WP=CE05382 /CHR=4 /FEA=Genomic Cluster /GEN=flp-9 /DEF=FMRFamide-like peptide 9
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070035 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-9) (flp-9) mRNA, complete cds. 11/11 None
SNAP00000044132 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12754785:12757473:-1 10/11 None
GENEFINDER00000044135 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12754785:12757536:-1 10/11 None
C36H8.3 ENSEMBL cdna:known chromosome:CEL140:IV:12754531:12757644:-1 gene:C36H8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12754609-12757651(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flp-9
Ensembl C36H8.3
Entrez Gene 178232 Entrez gene
SwissProt Q18502 EMBL-EBI
WormBase CE05382 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7218 neuropeptide signaling pathway inferred from electronic annotation QuickGO AmiGO
1508 regulation of action potential inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
42165 neurotransmitter binding inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93480 Hypothetical protein C36H8.3 [Caenorhabditis elegans] ref|NP_502436.1| FMRF-Like Peptide family member (flp-9) [Caenorhabditis elegans] gb|AAC08946.1| FMRFamide-like peptide 9 [Caenorhabditis elegans] 2.0E-88
blast CAA93480 Hypothetical protein C36H8.3 [Caenorhabditis elegans] ref|NP_502436.1| FMRF-Like Peptide family member (flp-9) [Caenorhabditis elegans] gb|AAC08946.1| FMRFamide-like peptide 9 [Caenorhabditis elegans] 4.0E-66
blast CAA93480 Hypothetical protein C36H8.3 [Caenorhabditis elegans] ref|NP_502436.1| FMRF-Like Peptide family member (flp-9) [Caenorhabditis elegans] gb|AAC08946.1| FMRFamide-like peptide 9 [Caenorhabditis elegans] 2.0E-53
blast CAE74551 Hypothetical protein CBG22307 [Caenorhabditis briggsae] 2.0E-35
blast CAE74551 Hypothetical protein CBG22307 [Caenorhabditis briggsae] 3.0E-35
blast CAE74551 Hypothetical protein CBG22307 [Caenorhabditis briggsae] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.055
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.045
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.055
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.045
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.055
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.045
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502436.1 1 61-78
C36H8.3 1 61-78
GENEFINDER00000044135 1 25-42
Sequence
Target Sequence 
>C. ELEGANS:173466_S_AT
cttctttttctggtctcgtttccagagaaaaacccagcagcatcgtctgaagaagggtga
aacattttttgtttcaaagaagaaaaaaatgaatcaattttatgcactattccttgtcgc
ctgtattgcagcaatggcaaatgcctatgaggagccagatttggatgcactcgccgagtt
ctgtggaaaggaatcgaatcgaaagtactgtgatcaaattgcacaactcgccactcagca
cgcaatcggtattaatcaggagcaagtccgaatggaaaagcggaagccgtcgttcgtccg
tttcggaaaacgttcaggatacccgctggtaattgatgacgaggaaatgcgtatggacaa
gagaaagccatcatttgttcgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTTTTTCTGGTCTCGTTTCCAG 336 221 97 Antisense
ATTTTATGCACTATTCCTTGTCGCC 435 15 193 Antisense
TTCCTTGTCGCCTGTATTGCAGCAA 222 699 206 Antisense
GGAGCCAGATTTGGATGCACTCGCC 664 521 247 Antisense
GATGCACTCGCCGAGTTCTGTGGAA 430 413 260 Antisense
TGATCAAATTGCACAACTCGCCACT 199 565 307 Antisense
CCACTCAGCACGCAATCGGTATTAA 93 273 327 Antisense
TGGAAAAGCGGAAGCCGTCGTTCGT 543 535 369 Antisense
GAAAACGTTCAGGATACCCGCTGGT 216 353 402 Antisense
TACCCGCTGGTAATTGATGACGAGG 405 519 416 Antisense
GAGAAAGCCATCATTTGTTCGATTT 75 393 457 Antisense
Sequence Source GenBank