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[173463_s_at]

Description g7188776 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F08B12.3B /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F08B12.3B /WP=CE18570 /CHR=X /FEA=Genomic Cluster /GEN=slo-2 /DEF=SLO-2 potassium channel
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 31      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 70      6grp_total > 30      4grp_total > 39      6grp_highest_sub > 02_03      6grp_cgc > 72      6grp_high1_sub > 03      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 360.2
(3)
P 		181.4
(-1.5)
P 		122.2
(-3)
P 		199.2
(-1.1)
P 		238
B 256.4
(3)
P 		147.9
(-2.5)
P 		138
(-3)
P 		247.6
(2.6)
P 		118
C 486.9
(3)
P 		204.2
(-2.5)
P 		178.8
(-3)
P 		270.6
(-1.2)
P 		308
avr 367.8
(3) 		177.8
(-2.1) 		146.3
(-3) 		239.1
(-0.5) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 216.6
(-1.5)
P 		363.1
(1.9)
P 		408.7
(3)
P 		239.2
(-1)
P 		157.1
(-2.9)
P 		152.3
(-3)
P 		256
B 317.3
(0.1)
P 		358.1
(1.3)
P 		416.6
(3)
P 		304.5
(-0.3)
P 		212.1
(-3)
P 		227.3
(-2.6)
P 		205
C 293.5
(0.4)
P 		414.1
(3)
P 		317.9
(0.9)
P 		253.4
(-0.5)
P 		135.2
(-3)
P 		266.7
(-0.2)
P 		279
avr 275.8
(0) 		378.4
(2.9) 		381.1
(3) 		265.7
(-0.3) 		168.1
(-3) 		215.4
(-1.7) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 131.2
(3)
P 		39.4
(-2.4)
P 		31.9
(-2.8)
P 		29.2
(-3)
P 		102
B 81.8
(3)
P 		36.5
(-2.5)
P 		32
(-3)
P 		52.8
(-0.5)
P 		50
C 161.2
(3)
P 		58.7
(-2.3)
P 		62.3
(-2.1)
P 		45.6
(-3)
P 		116
avr 124.7
(3) 		44.9
(-2.8) 		42.1
(-3) 		42.5
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 39.9
(-2.8)
P 		129.1
(3)
P 		89
(0.4)
P 		60.7
(-1.5)
P 		47.4
(-2.3)
P 		37.1
(-3)
P 		92
B 110.4
(1.6)
P 		119.2
(3)
P 		101.2
(0.2)
P 		80.7
(-3)
P 		86.2
(-2.1)
P 		84.8
(-2.4)
P 		39
C 108.8
(1.7)
P 		126.4
(3)
P 		80.9
(-0.3)
P 		51
(-2.5)
P 		43.8
(-3)
P 		89.3
(0.3)
P 		83
avr 86.4
(-0.5) 		124.9
(3) 		90.4
(-0.1) 		64.1
(-2.5) 		59.1
(-3) 		70.4
(-2) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173463_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25831
Sequence Type Exemplar sequence
Representative Public ID 7188776 NCBI
Target Description g7188776 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F08B12.3B /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F08B12.3B /WP=CE18570 /CHR=X /FEA=Genomic Cluster /GEN=slo-2 /DEF=SLO-2 potassium channel
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029357(11), NM_001029356(11), NM_001029358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029357 NCBI Caenorhabditis elegans SLOwpoke potassium channel family member (slo-2) (slo-2) mRNA, complete cds. 11/11 None
NM_001029356 NCBI Caenorhabditis elegans SLOwpoke potassium channel family member (slo-2) (slo-2) mRNA, complete cds. 11/11 None
NM_001029358 NCBI Caenorhabditis elegans SLOwpoke potassium channel family member (slo-2) (slo-2) mRNA, complete cds. 11/11 None
SNAP00000001946 ENSEMBL cdna:SNAP chromosome:CEL140:X:11394623:11399459:-1 11/11 None
GENEFINDER00000001952 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11394623:11400610:-1 11/11 None
F08B12.3b ENSEMBL cdna:known chromosome:CEL140:X:11394529:11400610:-1 gene:F08B12.3 11/11 A 
F08B12.3a ENSEMBL cdna:known chromosome:CEL140:X:11394535:11400809:-1 gene:F08B12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11394623-11400611(-) 100.0 100.0
Public Domain and Genome References
Ensembl F08B12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92116 Hypothetical protein F08B12.3b [Caenorhabditis elegans] ref|NP_001024528.1| SLOwpoke potassium channel family member (slo-2) [Caenorhabditis elegans] gb|AAF37866.1| SLO-2 potassium channel [Caenorhabditis elegans] 0.0
blast CAA92115 Hypothetical protein F08B12.3a [Caenorhabditis elegans] ref|NP_001024527.1| SLOwpoke potassium channel family member (slo-2) [Caenorhabditis elegans] gb|AAD51350.1| putative potassium channel Slo-2 [Caenorhabditis elegans] 0.0
blast CAI79159 Hypothetical protein F08B12.3c [Caenorhabditis elegans] ref|NP_001024529.1| SLOwpoke potassium channel family member (slo-2) [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024528.1 5 124-146,170-192,213-235,250-267,274-291
NP_001024527.1 5 124-146,170-192,213-235,250-267,274-291
NP_001024529.1 6 104-126,133-155,194-216,229-248,252-271,291-313
F08B12.3b 5 124-146,170-192,213-235,250-267,274-291
F08B12.3a 5 124-146,170-192,213-235,250-267,274-291
SNAP00000001946 5 72-94,109-131,144-163,167-186,206-228
GENEFINDER00000001952 5 124-146,170-192,213-235,250-267,274-291
Sequence
Target Sequence 
>C. ELEGANS:173463_S_AT
ccgactaccatttgcacaaggaggtgtttttagtgctaacatgctggatagattacttta
tcaggctattatcaaaccgtttgtggttgatctagtcagacttcttcttggaattgatca
acatagtgatggcggatatttaacttcgtttgttatcacatcggatgacttatggattcg
gaattatggacgattgtatcaaaaactatgctcctctgtggctgatattcctatcggtat
tttcagaaccaaaaagatggacactaagacggtatcccttgatcttcaagaacaatgcaa
agattttgaaaacactgaaatgggaagaaacaaagatatgtatgatcatgtgaaaaatcg
aatgagacttcttaatataaaagacactcatactgtgctcgaaggaagcgatgaaaagtc
gcaaatctcatatgtcatcatcaatcctgctcaagatttggaactagagtccggagatat
tggctacgtaatcagaagtccaatccggaaagatgcaaccaacgcaagaattaacccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGACTACCATTTGCACAAGGAGGT 579 263 2707 Antisense
ATCAGGCTATTATCAAACCGTTTGT 569 29 2766 Antisense
ATCTAGTCAGACTTCTTCTTGGAAT 64 33 2796 Antisense
GATGGCGGATATTTAACTTCGTTTG 232 407 2834 Antisense
GATTGTATCAAAAACTATGCTCCTC 421 435 2898 Antisense
CTCCTCTGTGGCTGATATTCCTATC 346 235 2917 Antisense
GACACTAAGACGGTATCCCTTGATC 657 365 2966 Antisense
AAAGTCGCAAATCTCATATGTCATC 26 123 3121 Antisense
ATATGTCATCATCAATCCTGCTCAA 467 19 3136 Antisense
TACGTAATCAGAAGTCCAATCCGGA 401 647 3191 Antisense
GCAACCAACGCAAGAATTAACCCAA 197 319 3221 Antisense
Sequence Source GenBank