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[173462_s_at] Zinc finger

Description g9437924 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=C03B8.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=C03B8.4 /WP=CE24782 /CHR=3 /FEA=Genomic Cluster /DEF=zinc finger protein LIN-13; Zinc finger
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 10      6grp_total > 38      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1288
1 2 3 4 range
A 2097.7
(3)
P 		965.5
(-3)
P 		987.5
(-2.9)
P 		1024.6
(-2.7)
P 		1132
B 2253.4
(3)
P 		967.9
(-3)
P 		968.5
(-3)
P 		1577.2
(-0.2)
P 		1286
C 2080
(3)
P 		1129.8
(-2.9)
P 		1115.3
(-3)
P 		1466.3
(-0.8)
P 		965
avr 2143.7
(3) 		1021.1
(-3) 		1023.8
(-3) 		1356
(-1.2) 		1123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 990
1 2 3 4 5 6 range
A 1828.7
(3)
P 		1365.4
(0)
P 		1031.1
(-2.1)
P 		888.5
(-3)
P 		1301.8
(-0.4)
P 		1364.7
(0)
P 		940
B 1853
(3)
P 		1523.8
(1)
P 		863.1
(-3)
P 		1119.9
(-1.4)
P 		962.3
(-2.4)
P 		1757.1
(2.4)
P 		990
C 1711.4
(2.8)
P 		1436.3
(0.7)
P 		959.5
(-3)
P 		1089.5
(-2)
P 		1069.3
(-2.2)
P 		1741.5
(3)
P 		782
avr 1797.7
(3) 		1441.8
(0.5) 		951.2
(-3) 		1032.6
(-2.4) 		1111.1
(-1.9) 		1621.1
(1.7) 		847
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 614
1 2 3 4 range
A 763.8
(3)
P 		209.6
(-2.4)
P 		258.2
(-1.9)
P 		150
(-3)
P 		614
B 718.6
(3)
P 		239.1
(-2.8)
P 		224.4
(-3)
P 		336.1
(-1.6)
P 		494
C 688.6
(3)
P 		324.8
(-1.9)
P 		388.7
(-1.1)
P 		247.2
(-3)
P 		441
avr 723.7
(3) 		257.8
(-2.8) 		290.4
(-2.4) 		244.4
(-3) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 337.1
(-0.4)
P 		485.6
(3)
P 		224.5
(-3)
P 		225.4
(-3)
P 		392.8
(0.9)
P 		332.3
(-0.5)
P 		261
B 644.8
(2.9)
P 		507.2
(1)
P 		209.6
(-3)
P 		296.6
(-1.8)
P 		391
(-0.6)
P 		655.2
(3)
P 		446
C 634.3
(3)
P 		438.3
(0.2)
P 		244.2
(-2.6)
P 		219.1
(-3)
P 		346
(-1.2)
P 		583
(2.3)
P 		415
avr 538.7
(3) 		477
(1.8) 		226.1
(-3) 		247
(-2.6) 		376.6
(-0.1) 		523.5
(2.7) 		313
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173462_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24003
Sequence Type Exemplar sequence
Representative Public ID 9437924 NCBI
Target Description g9437924 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=C03B8.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=C03B8.4 /WP=CE24782 /CHR=3 /FEA=Genomic Cluster /DEF=zinc finger protein LIN-13; Zinc finger
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066277(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066277 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-13) (lin-13) mRNA, complete cds. 11/11 A 
C03B8.4 ENSEMBL cdna:known chromosome:CEL140:III:7700261:7709395:-1 gene:C03B8.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7700285-7709394(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger
Gene Symbol lin-13
Ensembl C03B8.4
Entrez Gene 176083 Entrez gene
SwissProt Q11107 EMBL-EBI
WormBase CE30419 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50671 Abnormal cell lineage protein 13 [Caenorhabditis elegans] ref|NP_498678.3| abnormal cell LINeage family member (lin-13) [Caenorhabditis elegans] gb|AAF87497.1| zinc finger protein LIN-13 [Caenorhabditis elegans] sp|Q11107|LIN13_CAEEL Zinc finger protein lin-13 (Abnormal cell lineage protein 13) 0.0
blast T15390 hypothetical protein C03B8.4 - Caenorhabditis elegans 0.0
blast CAE57179 Hypothetical protein CBG00018 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.4E-5
Sequence
Target Sequence 
>C. ELEGANS:173462_S_AT
attattttcttatttgatctctctaaacgaaaccaatcactttctgtaaatgattcaatt
attcttaaattaatgttatttgtcaaaattaaacaatatccacttccattttttctgtct
aactattagacgccatctgatcgatctcacctactggtttctttaaatgttctttcggct
cgagttaatataaaataccagtacttgtctacacttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATTTTCTTATTTGATCTCTCTA 85 15 6310 Antisense
GATCTCTCTAAACGAAACCAATCAC 148 419 6325 Antisense
GAAACCAATCACTTTCTGTAAATGA 396 359 6338 Antisense
AACAATATCCACTTCCATTTTTTCT 261 135 6401 Antisense
ACTTCCATTTTTTCTGTCTAACTAT 323 103 6411 Antisense
TCTAACTATTAGACGCCATCTGATC 568 613 6427 Antisense
TATTAGACGCCATCTGATCGATCTC 73 663 6433 Antisense
TCGATCTCACCTACTGGTTTCTTTA 176 603 6450 Antisense
TTCTTTAAATGTTCTTTCGGCTCGA 424 681 6468 Antisense
ATGTTCTTTCGGCTCGAGTTAATAT 596 45 6476 Antisense
ATACCAGTACTTGTCTACACTTATT 508 19 6504 Antisense
Sequence Source GenBank