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[173461_at]

Description g535510 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=M05B5.5 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=M05B5.5 /WP=CE06191 /CHR=1 /FEA=Genomic Cluster /GEN=hlh-2 /DEF=transcription factor E2-A like
Cluster 6grp_high1_10_10 > 35      4grp_high_8_8 > 34      6grp_total > 36      4grp_total > 46      6grp_cgc > 14      6grp_high1_sub > 02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 159.1
(3)
P 		110.1
(0.4)
P 		47.4
(-3)
A 		64.7
(-2.1)
P 		112
B 193
(3)
P 		151.9
(0.8)
P 		89.5
(-2.5)
P 		80.5
(-3)
P 		113
C 181.9
(3)
P 		112.1
(-2.2)
P 		101.7
(-3)
P 		127.6
(-1.1)
P 		80
avr 178
(3) 		124.7
(-0.2) 		79.5
(-3) 		90.9
(-2.3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 121.5
(-0.5)
P 		223
(3)
P 		109.1
(-0.9)
P 		48
(-3)
P 		94.4
(-1.4)
P 		114
(-0.7)
P 		175
B 209.5
(2)
P 		234.5
(3)
P 		116.4
(-1.7)
P 		124.8
(-1.3)
P 		83
(-3)
P 		153.4
(-0.2)
P 		152
C 202.4
(3)
P 		126.8
(0)
P 		85.2
(-1.6)
P 		96
(-1.2)
M 		48.7
(-3)
A 		138.1
(0.5)
P 		154
avr 177.8
(2.1) 		194.8
(3) 		103.6
(-1.6) 		89.6
(-2.3) 		75.4
(-3) 		135.2
(0) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 57.9
(3)
P 		23.9
(-1.2)
P 		12.4
(-2.6)
A 		9.5
(-3)
P 		48
B 61.6
(3)
P 		37.5
(-0.3)
P 		20.7
(-2.5)
P 		17.2
(-3)
P 		44
C 60.2
(3)
P 		32.2
(-1.3)
P 		35.4
(-0.8)
P 		21.5
(-3)
P 		39
avr 59.9
(3) 		31.2
(-0.9) 		22.8
(-2.1) 		16.1
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 22.4
(-2.1)
P 		79.3
(3)
P 		23.7
(-2)
P 		12.2
(-3)
P 		28.5
(-1.5)
P 		27.8
(-1.6)
P 		67
B 72.9
(2.4)
P 		78.1
(3)
P 		28.3
(-3)
P 		33.1
(-2.4)
P 		33.7
(-2.3)
P 		57.2
(0.5)
P 		50
C 75
(3)
P 		38.7
(-0.7)
P 		21.7
(-2.4)
P 		19.3
(-2.6)
M 		15.8
(-3)
A 		46.2
(0.1)
P 		59
avr 56.8
(1.8) 		65.4
(3) 		24.6
(-2.6) 		21.5
(-3) 		26
(-2.4) 		43.7
(0) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22650
Sequence Type Exemplar sequence
Representative Public ID 535510 NCBI
Target Description g535510 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=M05B5.5 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=M05B5.5 /WP=CE06191 /CHR=1 /FEA=Genomic Cluster /GEN=hlh-2 /DEF=transcription factor E2-A like
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026410 NCBI Caenorhabditis elegans Helix Loop Helix family member (hlh-2) (hlh-2) mRNA, complete cds. 11/11 None
M05B5.5a.2 ENSEMBL cdna:known chromosome:CEL140:I:7198702:7202045:-1 gene:M05B5.5 11/11 None
M05B5.5a.1 ENSEMBL cdna:known chromosome:CEL140:I:7198979:7202043:-1 gene:M05B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7198987-7201970(-) 100.0 100.0
Public Domain and Genome References
Ensembl M05B5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95787 Hypothetical protein M05B5.5a [Caenorhabditis elegans] emb|CAA95837.1| Hypothetical protein M05B5.5a [Caenorhabditis elegans] ref|NP_001021581.1| Helix Loop Helix family member (hlh-2) [Caenorhabditis elegans] 0.0
blast AAC13874 transcription factor E12/47 homolog 0.0
blast AAA21347 basic-helix-loop-helix transcription factor E12/47 homolog 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 7.1E-11
Sequence
Target Sequence 
>C. ELEGANS:173461_AT
gactttttaagcatttcaaactatcattcccaatcttctcccaatcatccatacggctaa
aactctctagcatattgtttttttgttcaaactattcaaatgttccccttcatctccctc
cggattggaggtcctgtgatttctcaacttcaatcagttttcagttttaaaaattttaaa
ctttattacaagatcatcacaattttctgtatgtttttaatttattttctcctctaaatt
taaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTTTAAGCATTTCAAACTATC 14 335 1225 Antisense
CTCCCAATCATCCATACGGCTAAAA 24 233 1262 Antisense
TCATCCATACGGCTAAAACTCTCTA 101 623 1269 Antisense
ACTCTCTAGCATATTGTTTTTTTGT 176 101 1286 Antisense
TTGTTCAAACTATTCAAATGTTCCC 457 701 1307 Antisense
CCTTCATCTCCCTCCGGATTGGAGG 541 269 1331 Antisense
ATCTCCCTCCGGATTGGAGGTCCTG 427 33 1336 Antisense
GGAGGTCCTGTGATTTCTCAACTTC 159 517 1351 Antisense
GATTTCTCAACTTCAATCAGTTTTC 205 429 1362 Antisense
TTACAAGATCATCACAATTTTCTGT 434 683 1410 Antisense
TATTTTCTCCTCTAAATTTAAATCA 400 661 1447 Antisense
Sequence Source GenBank