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[173460_s_at]

Description g5713132 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F26G5.9 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F26G5.9 /WP=CE09704 /CHR=5 /FEA=Genomic Cluster /GEN=tam-1 /DEF=tandem-array-modifier protein
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 68      6grp_total > 49      4grp_total > 10      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2208
1 2 3 4 range
A 1190.9
(-2.7)
P 		1422.2
(-1.9)
P 		1097.6
(-3)
P 		2794.1
(3)
P 		1697
B 1154.1
(-3)
P 		1333.6
(-2.5)
P 		1236.5
(-2.8)
P 		3305.9
(3)
P 		2152
C 1289.9
(-3)
P 		1395.7
(-2.6)
P 		1364
(-2.7)
P 		2957.5
(3)
P 		1668
avr 1211.6
(-3) 		1383.8
(-2.4) 		1232.7
(-2.9) 		3019.2
(3) 		1808

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1597
1 2 3 4 5 6 range
A 2035
(1.5)
P 		1528.9
(-0.7)
P 		1000.7
(-3)
P 		1374.9
(-1.4)
P 		2375.6
(3)
P 		2266.4
(2.5)
P 		1375
B 1978.4
(-0.4)
P 		1750.1
(-1.6)
P 		1633.9
(-2.2)
P 		1491.2
(-3)
P 		2156
(0.6)
P 		2597.6
(3)
P 		1106
C 1955.9
(2.3)
P 		1406.5
(-1.5)
P 		1197.5
(-3)
P 		1315.1
(-2.2)
P 		1882.9
(1.8)
P 		2050.7
(3)
P 		853
avr 1989.8
(1.2) 		1561.8
(-1.3) 		1277.4
(-3) 		1393.7
(-2.3) 		2138.2
(2) 		2304.9
(3) 		1028
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 433.6
(3)
P 		308.7
(-2.1)
P 		286.9
(-3)
P 		409
(2)
P 		147
B 368
(-1.8)
P 		329.4
(-2.4)
P 		286.5
(-3)
P 		704.5
(3)
P 		418
C 427
(-1.4)
P 		401.3
(-3)
P 		475.4
(1.6)
P 		498.7
(3)
P 		97
avr 409.5
(-1) 		346.5
(-3) 		349.6
(-2.9) 		537.4
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 751
1 2 3 4 5 6 range
A 375.1
(-1.1)
P 		543.8
(0.9)
P 		217.9
(-3)
P 		348.7
(-1.4)
P 		716.9
(3)
P 		551.8
(1)
P 		499
B 688.4
(0.1)
P 		582.5
(-1)
P 		396.8
(-3)
P 		395
(-3)
P 		876
(2)
P 		968.6
(3)
P 		574
C 725
(3)
P 		429.2
(-0.9)
P 		304.8
(-2.5)
P 		264.5
(-3)
P 		609.3
(1.5)
P 		686.5
(2.5)
P 		461
avr 596.2
(1.1) 		518.5
(-0) 		306.5
(-3) 		336.1
(-2.6) 		734.1
(3) 		735.6
(3) 		429
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173460_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25645
Sequence Type Exemplar sequence
Representative Public ID 5713132 NCBI
Target Description g5713132 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F26G5.9 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F26G5.9 /WP=CE09704 /CHR=5 /FEA=Genomic Cluster /GEN=tam-1 /DEF=tandem-array-modifier protein
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071934 NCBI Caenorhabditis elegans Tandem Array expression Modifier family member (tam-1) (tam-1) mRNA, complete cds. 11/11 A 
F26G5.9 ENSEMBL cdna:known chromosome:CEL140:V:4958421:4962900:-1 gene:F26G5.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4958441-4962809(-) 96.18 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tam-1
Ensembl F26G5.9
Entrez Gene 178887 Entrez gene
SwissProt O16936 EMBL-EBI
WormBase CE09704 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
43073 germ cell nucleus inferred from direct assay QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504335 Tandem Array expression Modifier family member (tam-1) [Caenorhabditis elegans] gb|AAC48041.1| Tandem array expression modifier protein 1 [Caenorhabditis elegans] gb|AAD47816.1| tandem-array-modifier protein [Caenorhabditis elegans] 0.0
blast CAE73154 Hypothetical protein CBG20546 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.4E-9
Sequence
Target Sequence 
>C. ELEGANS:173460_S_AT
taatcttctcatttcgtctaatcacctcatccatgcttttattctgatttttgtccataa
ttttcacctattgttctaaagcacatttcccccattcattctttccccttttattcaccg
tcatgaattctctacggtttagatgctagatgctctctctctcctctttcttcttatata
cttggtatcttctaaaactctttgcggatcatttttttctctacacgctttacacttatc
atttcgattttcgttacatcttttttctgtaagcctcatttctacttgcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCTTCTCATTTCGTCTAATCAC 656 635 2853 Antisense
AATCACCTCATCCATGCTTTTATTC 336 171 2872 Antisense
GTCCATAATTTTCACCTATTGTTCT 272 477 2905 Antisense
ATTGTTCTAAAGCACATTTCCCCCA 408 3 2922 Antisense
TTAGATGCTAGATGCTCTCTCTCTC 635 681 2991 Antisense
CTCCTCTTTCTTCTTATATACTTGG 566 235 3013 Antisense
GGTATCTTCTAAAACTCTTTGCGGA 263 505 3036 Antisense
TGCGGATCATTTTTTTCTCTACACG 447 583 3055 Antisense
TCTCTACACGCTTTACACTTATCAT 292 613 3070 Antisense
GATTTTCGTTACATCTTTTTTCTGT 209 429 3098 Antisense
TGTAAGCCTCATTTCTACTTGCATC 509 559 3120 Antisense
Sequence Source GenBank