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[173459_s_at] anion exchange protein

Description g3142334 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F52B5.1 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F52B5.1 /WP=CE27167 /CHR=1 /FEA=Genomic Cluster /DEF=HCO3 transporter; anion exchange protein
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 49      4grp_high_8_8 > 49      6grp_highest_nonorm > 11      6grp_total > 06      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1647
1 2 3 4 range
A 2372.4
(3)
P 		1588.4
(0.1)
P 		1372.8
(-0.7)
P 		744.9
(-3)
P 		1628
B 2250.9
(3)
P 		1432.2
(-0.4)
P 		1179.3
(-1.4)
P 		801.3
(-3)
P 		1450
C 2392.2
(3)
P 		1532.6
(-0.1)
P 		1613.4
(0.2)
P 		750.5
(-3)
P 		1642
avr 2338.5
(3) 		1517.7
(-0.1) 		1388.5
(-0.6) 		765.6
(-3) 		1573

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2011
1 2 3 4 5 6 range
A 2582.3
(3)
P 		1640.8
(-0.4)
P 		1283.2
(-1.7)
P 		909.9
(-3)
P 		1524.3
(-0.8)
P 		1089.2
(-2.4)
P 		1672
B 2920.5
(3)
P 		1912.8
(-0.3)
P 		1093
(-3)
P 		1192.7
(-2.7)
P 		1286.1
(-2.4)
P 		1169.6
(-2.7)
P 		1828
C 2776.9
(3)
P 		1638.5
(-0.7)
P 		1245.5
(-2)
P 		978.8
(-2.8)
P 		1210.2
(-2.1)
P 		927.8
(-3)
P 		1849
avr 2759.9
(3) 		1730.7
(-0.6) 		1207.2
(-2.4) 		1027.1
(-3) 		1340.2
(-1.9) 		1062.2
(-2.9) 		1733
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 755
1 2 3 4 range
A 863.8
(3)
P 		344.8
(-1.1)
P 		358.9
(-1)
P 		109
(-3)
P 		755
B 717.8
(3)
P 		353.7
(-1)
P 		273.3
(-1.9)
P 		170.8
(-3)
P 		547
C 791.9
(3)
P 		440.6
(-0.2)
P 		562.3
(0.9)
P 		126.5
(-3)
P 		665
avr 791.2
(3) 		379.7
(-0.8) 		398.2
(-0.6) 		135.4
(-3) 		656

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 833
1 2 3 4 5 6 range
A 476
(1.2)
P 		583.6
(3)
P 		279.4
(-2.2)
P 		230.8
(-3)
P 		460
(0.9)
P 		265.2
(-2.4)
P 		353
B 1016.2
(3)
P 		636.7
(-0)
P 		265.4
(-3)
P 		315.9
(-2.6)
P 		522.5
(-0.9)
P 		436.1
(-1.6)
P 		751
C 1029.3
(3)
P 		500
(-0.8)
P 		317
(-2.1)
P 		196.8
(-3)
P 		391.6
(-1.6)
P 		310.6
(-2.2)
P 		833
avr 840.5
(3) 		573.4
(0.3) 		287.3
(-2.6) 		247.8
(-3) 		458
(-0.9) 		337.3
(-2.1) 		593
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173459_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22941
Sequence Type Exemplar sequence
Representative Public ID 3142334 NCBI
Target Description g3142334 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F52B5.1 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F52B5.1 /WP=CE27167 /CHR=1 /FEA=Genomic Cluster /DEF=HCO3 transporter; anion exchange protein
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059857 NCBI Caenorhabditis elegans Anion/Bicarbonate TranSporter family member (abts-1) (abts-1) mRNA, complete cds. 11/11 A 
F52B5.1 ENSEMBL cdna:known chromosome:CEL140:I:8305055:8315690:-1 gene:F52B5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8305001-8314338(-) 99.63 99.63
Public Domain and Genome References
Gene Title anion exchange protein
Gene Symbol abts-1
Ensembl F52B5.1
Entrez Gene 172613 Entrez gene
SwissProt Q20642 EMBL-EBI
WormBase CE27167 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246942_AT anion exchange protein family at
CANINE_2:CFAAFFX.9377.1.S1_S_AT similar to solute carrier family 4, sodium bicarbonate cotransporter, member 7 cfa
CANINE_2:CFAAFFX.9384.1.S1_S_AT similar to solute carrier family 4, sodium bicarbonate cotransporter, member 7 cfa
CANINE_2:CFAAFFX.9392.1.S1_S_AT similar to solute carrier family 4, sodium bicarbonate cotransporter, member 7 cfa
CHICKEN:GGA.11901.1.S1_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 gga
CHICKEN:GGA.9352.1.S1_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 gga
CHICKEN:GGAAFFX.23557.1.S1_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 gga
CHICKEN:GGAAFFX.23557.10.S1_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 gga
CHICKEN:GGAAFFX.7192.1.S1_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 gga
CHICKEN:GGAAFFX.7194.1.S1_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 gga
CHICKEN:GGAAFFX.7203.1.S1_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 gga
HG-U133_PLUS_2:210286_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133A:210286_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133A_2:210286_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133_PLUS_2:207604_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133A:207604_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133A_2:207604_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133_PLUS_2:209884_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-FOCUS:209884_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133A:209884_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133A_2:209884_S_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133_PLUS_2:207603_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133A:207603_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U133A_2:207603_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HU35KSUBB:RC_AA188932_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HU35KSUBC:RC_AA243166_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
U133_X3P:G6650103_3P_A_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
U133_X3P:G5051627_3P_A_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
U133_X3P:G4507028_3P_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
U133_X3P:G4507028_3P_A_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
U133_X3P:207603_3P_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U95AV2:34936_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U95B:54598_R_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U95B:56632_R_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U95E:69487_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HG-U95B:47645_AT Solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HU35KSUBD:RC_AA216661_AT Solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
HU35KSUBD:RC_AA442754_AT Solute carrier family 4, sodium bicarbonate cotransporter, member 7 hs
MG-U74AV2:161573_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 mm
MOE430A:1438673_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 mm
MOUSE430A_2:1438673_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 mm
MOUSE430_2:1438673_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 mm
MOE430B:1455876_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 mm
MOUSE430_2:1455876_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 mm
MOE430B:1457528_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 mm
MOUSE430_2:1457528_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 mm
MG-U74AV2:93471_AT PREDICTED: similar to sodium bicarbonate cotransporter 2b [Mus musculus], mRNA sequence mm
MU11KSUBA:AA592390_AT PREDICTED: similar to sodium bicarbonate cotransporter 2b [Mus musculus], mRNA sequence mm
MU11KSUBB:MSA.42198.0_S_AT PREDICTED: similar to sodium bicarbonate cotransporter 2b [Mus musculus], mRNA sequence mm
RAE230A:1369160_A_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 rn
RAT230_2:1369160_A_AT solute carrier family 4, sodium bicarbonate cotransporter, member 7 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6820 anion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5452 inorganic anion exchanger activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99853 Hypothetical protein F52B5.1 [Caenorhabditis elegans] ref|NP_492258.1| Anion/Bicarbonate TranSporter family member (abts-1) [Caenorhabditis elegans] gb|AAX34415.1| anion transporter ABTS-1 [Caenorhabditis elegans] 0.0
blast ABA18179 sodium dependent chloride bicarbonate anion exchanger alternative variant a [Caenorhabditis elegans] 0.0
blast AAC16758 HCO3 transporter [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492258.1 11 428-450,463-485,518-540,547-564,648-665,681-703,733-752,778-800,833-852,859-878,916-938
F52B5.1 11 428-450,463-485,518-540,547-564,648-665,681-703,733-752,778-800,833-852,859-878,916-938
Sequence
Target Sequence 
>C. ELEGANS:173459_S_AT
gcccatcacagatctttctcaatttttccttacagtccaccgtcataattccgtttgtta
tcccccgtaagagaatcgtgttccacaaaatttgctttcttttttttttgatctttcttc
ttccaaaatgttaaccttttagacaattaaaattcacacatgaaatttcctaaacactta
tccactaatagttacccttcataagggcggttttttattcagtttcttttctaatcgatg
tttattttctttcctgtatcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCATCACAGATCTTTCTCAATTT 277 287 3462 Antisense
TTCTCAATTTTTCCTTACAGTCCAC 241 691 3477 Antisense
AGTCCACCGTCATAATTCCGTTTGT 191 61 3495 Antisense
GTTATCCCCCGTAAGAGAATCGTGT 213 447 3518 Antisense
GAATCGTGTTCCACAAAATTTGCTT 539 323 3534 Antisense
GAAATTTCCTAAACACTTATCCACT 140 363 3623 Antisense
ATCCACTAATAGTTACCCTTCATAA 507 39 3641 Antisense
TCATAAGGGCGGTTTTTTATTCAGT 522 607 3660 Antisense
ATTCAGTTTCTTTTCTAATCGATGT 469 11 3678 Antisense
TAATCGATGTTTATTTTCTTTCCTG 690 635 3693 Antisense
TGTTTATTTTCTTTCCTGTATCGTT 215 561 3700 Antisense
Sequence Source GenBank