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[173457_s_at]

Description g5442433 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=Y75B8A.35B /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=Y75B8A.35B /WP=CE23046 /CHR=3 /FEA=Genomic Cluster /GEN=zip-1 /DEF=DNA-binding protein ZIP-1
Cluster 6grp_high1_10_10 > 70      6grp_total > 02      4grp_total > 07      6grp_cgc > 42      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 130.2
(1.6)
P 		84.7
(-3)
A 		115.6
(0.1)
A 		144.1
(3)
P 		59
B 107
(3)
P 		49.8
(-3)
A 		70.4
(-0.8)
A 		101.4
(2.4)
P 		57
C 121.9
(3)
A 		75.8
(-2.9)
A 		75.3
(-3)
A 		111.9
(1.7)
P 		47
avr 119.7
(3) 		70.1
(-3) 		87.1
(-0.9) 		119.1
(2.9) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 129.4
(3)
P 		82.6
(-3)
P 		103.5
(-0.3)
P 		85.3
(-2.7)
P 		101.1
(-0.6)
P 		92
(-1.8)
P 		47
B 85.2
(-3)
P 		95.9
(-2.1)
P 		118
(-0.2)
P 		154.7
(3)
P 		114.9
(-0.4)
P 		94.6
(-2.2)
P 		70
C 108
(0.8)
P 		151.1
(3)
P 		72.1
(-1)
A 		31.5
(-3)
A 		105.2
(0.7)
P 		94
(0.1)
P 		120
avr 107.5
(2.3) 		109.9
(3) 		97.9
(-0.7) 		90.5
(-3) 		107.1
(2.1) 		93.5
(-2.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 47.4
(3)
P 		18.4
(-3)
A 		30.2
(-0.6)
A 		21.1
(-2.4)
P 		29
B 34.1
(3)
P 		12.3
(-3)
A 		16.3
(-1.9)
A 		21.6
(-0.4)
P 		22
C 40.3
(3)
A 		21.8
(-2.2)
A 		26.2
(-1)
A 		18.9
(-3)
P 		21
avr 40.6
(3) 		17.5
(-3) 		24.2
(-1.3) 		20.5
(-2.2) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 23.9
(-1.4)
P 		29.4
(2.3)
P 		22.5
(-2.4)
P 		21.6
(-3)
P 		30.5
(3)
P 		22.4
(-2.5)
P 		9
B 29.7
(-2.7)
P 		31.9
(-1.9)
P 		28.7
(-3)
P 		41
(1.1)
P 		46.7
(3)
P 		35.3
(-0.8)
P 		18
C 40
(2.1)
P 		46.1
(3)
P 		18.4
(-1.2)
A 		6.3
(-3)
A 		34
(1.2)
P 		31.5
(0.8)
P 		40
avr 31.2
(0.5) 		35.8
(2.4) 		23.2
(-2.9) 		23
(-3) 		37.1
(3) 		29.7
(-0.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173457_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23965
Sequence Type Exemplar sequence
Representative Public ID 5442433 NCBI
Target Description g5442433 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=Y75B8A.35B /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=Y75B8A.35B /WP=CE23046 /CHR=3 /FEA=Genomic Cluster /GEN=zip-1 /DEF=DNA-binding protein ZIP-1
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067201(11), NM_001027774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067201 NCBI Caenorhabditis elegans bZIP transcription factor family member (zip-1) (zip-1) mRNA, complete cds. 11/11 None
NM_001027774 NCBI Caenorhabditis elegans bZIP transcription factor family member (zip-1) (zip-1) mRNA, complete cds. 11/11 None
SNAP00000020097 ENSEMBL cdna:SNAP chromosome:CEL140:III:12336799:12354736:1 9/11 None
GENEFINDER00000020167 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12336799:12344870:1 11/11 None
Y75B8A.35a.1 ENSEMBL cdna:known chromosome:CEL140:III:12335630:12345213:1 gene:Y75B8A.35 11/11 None
Y75B8A.35a.3 ENSEMBL cdna:known chromosome:CEL140:III:12336780:12344870:1 gene:Y75B8A.35 11/11 None
Y75B8A.35a.2 ENSEMBL cdna:known chromosome:CEL140:III:12336782:12345213:1 gene:Y75B8A.35 11/11 None
Y75B8A.35b ENSEMBL cdna:known chromosome:CEL140:III:12336782:12345223:1 gene:Y75B8A.35 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12336795-12344867(+) 95.26 100.0
Public Domain and Genome References
Ensembl Y75B8A.35
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54500 Hypothetical protein Y75B8A.35a [Caenorhabditis elegans] ref|NP_499602.3| bZIP transcription factor family member (zip-1) [Caenorhabditis elegans] 0.0
blast AAD43348 DNA-binding protein ZIP-1 [Caenorhabditis elegans] 0.0
blast CAA22113 Hypothetical protein Y75B8A.35b [Caenorhabditis elegans] ref|NP_001022945.1| bZIP transcription factor family member (zip-1) [Caenorhabditis elegans] gb|AAD43347.1| DNA-binding protein ZIP-1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173457_S_AT
ggaagagctcaagcagacgctggaaatgctcagagaaaaagttcaagaagccaagcgtca
gaatgagatgcaagagaatggcctattggcggcctacgagactaatattttcgcagtaca
ggggaataacttcccatatggaagcctggagctgttttacgatcaattgcaaggatcgaa
agccgaggctgtcgagcaagttcaatatgacaataatggagaagtggtgcagttggaaga
ggccttcaacaaaaccgaacaggactacggacaatacacgagtgtcaaaaaaatcgcagg
actacctcaaaatacgtttgcttcgaaaaaatcccgtgcgaagacggctttcgagatcgc
cgaccatcagttgaatctcaaaaaggaggaggttgagctgagggaggcgaatgcgattaa
agtggtactcaatcaaatcacaagagaactgaaccgatacatggatggtgccaagcttgc
cgagcagcaggcttttgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGAGCTCAAGCAGACGCTGGAA 562 529 875 Antisense
GAGAATGGCCTATTGGCGGCCTACG 695 389 948 Antisense
GGCGGCCTACGAGACTAATATTTTC 628 225 962 Antisense
AAGCCTGGAGCTGTTTTACGATCAA 33 149 1016 Antisense
GATCGAAAGCCGAGGCTGTCGAGCA 521 415 1048 Antisense
GTGGTGCAGTTGGAAGAGGCCTTCA 394 487 1098 Antisense
GTTTGCTTCGAAAAAATCCCGTGCG 110 451 1190 Antisense
AAGACGGCTTTCGAGATCGCCGACC 412 153 1215 Antisense
ATCGCCGACCATCAGTTGAATCTCA 441 37 1230 Antisense
CATGGATGGTGCCAAGCTTGCCGAG 23 209 1334 Antisense
CTTGCCGAGCAGCAGGCTTTTGATG 463 219 1350 Antisense
Sequence Source GenBank