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[173453_s_at]

Description g6681679 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F20C5.2 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F20C5.2 /WP=CE27986 /CHR=4 /FEA=Genomic Cluster /GEN=klp-11 /DEF=Kinesin like protein (klp-11); kinesin
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 26      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 25      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 312.3
(3)
P 		212.7
(-1.5)
P 		179.4
(-3)
P 		257.2
(0.5)
P 		133
B 320.7
(3)
P 		199.7
(-2)
P 		181.8
(-2.8)
P 		176.7
(-3)
P 		144
C 276.3
(3)
P 		183.1
(-1.3)
P 		145.3
(-3)
P 		231.8
(1)
P 		131
avr 303.1
(3) 		198.5
(-1.7) 		168.8
(-3) 		221.9
(-0.6) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 211.7
(3)
P 		165.6
(0.3)
P 		192.1
(1.8)
P 		110.7
(-3)
P 		123.5
(-2.2)
P 		177.2
(1)
P 		101
B 286.5
(3)
P 		264.2
(2.2)
P 		152.4
(-1.8)
P 		184
(-0.7)
P 		120
(-3)
P 		148.6
(-2)
P 		167
C 280.7
(2.4)
P 		300.7
(3)
P 		200.6
(-0.2)
P 		163.6
(-1.4)
P 		114.7
(-3)
P 		150.5
(-1.8)
P 		186
avr 259.6
(3) 		243.5
(2.3) 		181.7
(-0.3) 		152.8
(-1.6) 		119.4
(-3) 		158.8
(-1.3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 113.7
(3)
P 		46.2
(-2.3)
P 		46.9
(-2.3)
P 		37.6
(-3)
P 		76
B 102.3
(3)
P 		49.3
(-1.9)
P 		42.1
(-2.6)
P 		37.7
(-3)
P 		65
C 91.5
(3)
P 		52.6
(-1.5)
P 		50.6
(-1.7)
P 		39.1
(-3)
P 		52
avr 102.5
(3) 		49.4
(-1.9) 		46.5
(-2.2) 		38.1
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 39
(-0.9)
P 		58.9
(3)
P 		41.8
(-0.3)
P 		28.1
(-3)
P 		37.3
(-1.2)
P 		43.2
(-0.1)
P 		31
B 99.7
(3)
P 		87.9
(1.9)
P 		37
(-3)
P 		48.7
(-1.9)
P 		48.8
(-1.9)
P 		55.4
(-1.2)
P 		63
C 104
(3)
P 		91.8
(2)
P 		51.1
(-1.5)
P 		32.9
(-3)
P 		37.1
(-2.6)
P 		50.4
(-1.5)
P 		71
avr 80.9
(3) 		79.5
(2.8) 		43.3
(-2.1) 		36.6
(-3) 		41.1
(-2.4) 		49.7
(-1.2) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173453_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24554
Sequence Type Exemplar sequence
Representative Public ID 6681679 NCBI
Target Description g6681679 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F20C5.2 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F20C5.2 /WP=CE27986 /CHR=4 /FEA=Genomic Cluster /GEN=klp-11 /DEF=Kinesin like protein (klp-11); kinesin
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027968 NCBI Caenorhabditis elegans F20C5.2b (kinesin) mRNA, complete cds. 11/11 None
F20C5.2b ENSEMBL cdna:known chromosome:CEL140:IV:8755046:8761978:-1 gene:F20C5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
AB017106 9/11 Negative Strand Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177685 2 1 NM_001027968 172023_x_at (11), 173453_s_at (11), 189816_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8755096-8761985(-) 99.16 100.0
Public Domain and Genome References
Ensembl F20C5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD36488 Hypothetical protein F20C5.2b [Caenorhabditis elegans] ref|NP_001023139.1| F20C5.2b [Caenorhabditis elegans] 0.0
blast CAA92295 Hypothetical protein F20C5.2a [Caenorhabditis elegans] ref|NP_741473.1| F20C5.2a [Caenorhabditis elegans] 0.0
blast AAF99085 KRP95 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.3E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023139.1 1 1107-1129
F20C5.2b 1 1107-1129
Sequence
Target Sequence 
>C. ELEGANS:173453_S_AT
ctgccgatcttctgatctttaaaacctaattcgaaatttcgaatttagtcgtcgttgcgg
gctttttcaggccttcttgtagtctcgaacagttttttaataagaaaatatcactattga
tacggttacctttcacattattagtgctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCCGATCTTCTGATCTTTAAAAC 476 237 3392 Antisense
TTCTGATCTTTAAAACCTAATTCGA 590 693 3401 Antisense
GAAATTTCGAATTTAGTCGTCGTTG 478 321 3424 Antisense
GAATTTAGTCGTCGTTGCGGGCTTT 638 323 3432 Antisense
GGCTTTTTCAGGCCTTCTTGTAGTC 72 539 3451 Antisense
TTTCAGGCCTTCTTGTAGTCTCGAA 129 671 3456 Antisense
GCCTTCTTGTAGTCTCGAACAGTTT 48 281 3462 Antisense
TGTAGTCTCGAACAGTTTTTTAATA 697 455 3469 Antisense
ATCACTATTGATACGGTTACCTTTC 67 29 3501 Antisense
GATACGGTTACCTTTCACATTATTA 105 423 3510 Antisense
TACCTTTCACATTATTAGTGCTGAT 672 649 3518 Antisense
Sequence Source GenBank