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[173451_s_at] N-acetylgalactosaminyltransferase

Description g3047202 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=Y46H3A.6 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=Y46H3A.6 /WP=CE24309 /CHR=5 /FEA=Genomic Cluster /GEN=gly-7 /DEF=GLY7; N-acetylgalactosaminyltransferase
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 03      4grp_high_8_8 > 47      6grp_highest_nonorm > 72      6grp_total > 29      4grp_total > 41      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 302.6
(-3)
P 		528.7
(3)
P 		459.3
(1.2)
P 		360.2
(-1.5)
P 		226
B 352
(-3)
P 		434.8
(2)
P 		378.9
(-1.4)
P 		452.2
(3)
P 		100
C 296.9
(-3)
P 		419.4
(-0.1)
P 		553.3
(3)
P 		334
(-2.1)
P 		256
avr 317.2
(-3) 		461
(2.9) 		463.8
(3) 		382.1
(-0.3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 344.6
(-3)
P 		396
(-0.5)
P 		401.2
(-0.2)
P 		466.3
(3)
P 		401
(-0.2)
P 		431.5
(1.3)
P 		122
B 464.1
(1.7)
P 		367.7
(-2.4)
P 		354.2
(-3)
P 		392.4
(-1.4)
P 		495.8
(3)
P 		432
(0.3)
P 		142
C 624.8
(3)
P 		289.8
(-3)
P 		439.7
(-0.3)
P 		394.2
(-1.1)
P 		553.2
(1.7)
P 		427.4
(-0.5)
P 		335
avr 477.8
(2.8) 		351.2
(-3) 		398.4
(-0.9) 		417.6
(0) 		483.3
(3) 		430.3
(0.6) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 110.2
(2.1)
P 		114.8
(2.5)
P 		120.1
(3)
P 		52.7
(-3)
P 		67
B 112.3
(3)
P 		107.4
(1.8)
P 		87.8
(-3)
P 		96.4
(-0.9)
P 		25
C 98.3
(-1.2)
P 		120.6
(-0.2)
P 		192.9
(3)
P 		56.3
(-3)
P 		137
avr 106.9
(0.5) 		114.3
(1.2) 		133.6
(3) 		68.5
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 63.5
(-3)
P 		140.8
(3)
P 		87.4
(-1.1)
P 		118.3
(1.3)
P 		121
(1.5)
P 		105.1
(0.2)
P 		77
B 161.5
(0.9)
P 		122.4
(-1.1)
P 		86
(-3)
P 		103.9
(-2.1)
P 		201.4
(3)
P 		161.1
(0.9)
P 		115
C 231.6
(3)
P 		88.4
(-2.6)
P 		111.9
(-1.7)
P 		79.3
(-3)
P 		179
(0.9)
P 		143.1
(-0.5)
P 		152
avr 152.2
(1.8) 		117.2
(-1.2) 		95.1
(-3) 		100.5
(-2.6) 		167.1
(3) 		136.4
(0.4) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173451_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25721
Sequence Type Exemplar sequence
Representative Public ID 3047202 NCBI
Target Description g3047202 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=Y46H3A.6 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=Y46H3A.6 /WP=CE24309 /CHR=5 /FEA=Genomic Cluster /GEN=gly-7 /DEF=GLY7; N-acetylgalactosaminyltransferase
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071111 NCBI Caenorhabditis elegans Y46H3A.6 (N-acetylgalactosaminyltransferase) mRNA, complete cds. 11/11 A 
GENEFINDER00000020858 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1816005:1821277:-1 11/11 None
Y46H3A.6 ENSEMBL cdna:known chromosome:CEL140:V:1815680:1821151:-1 gene:Y46H3A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1815705-1821119(-) 98.67 100.0
Public Domain and Genome References
Gene Title N-acetylgalactosaminyltransferase
Gene Symbol gly-7
Ensembl Y46H3A.6
Entrez Gene 178661 Entrez gene
SwissProt O61397 EMBL-EBI
WormBase CE24309 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19409.1.S1_AT similar to N-acetylgalactosaminyltransferase 7 (Protein-UDP acetylgalactosaminyltransferase 7) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 7) (Polypeptide GalNAc transferase 7) (GalNAc-T7) (pp-GaNTase 7) cfa
CANINE_2:CFAAFFX.10860.1.S1_S_AT similar to N-acetylgalactosaminyltransferase 7 (Protein-UDP acetylgalactosaminyltransferase 7) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 7) (Polypeptide GalNAc transferase 7) (GalNAc-T7) (pp-GaNTase 7) cfa
DROSOPHILA_2:1637736_A_AT UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 dm
DROSOPHILA_2:1629117_AT UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 dm
DROSGENOME1:154775_AT UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 dm
CHICKEN:GGAAFFX.23315.1.S1_S_AT similar to polypeptide N-acetylgalactosaminyltransferase 7 gga
HG-U133B:222587_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133_PLUS_2:222587_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HU35KSUBB:RC_AA047036_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HU35KSUBC:RC_AA234559_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133A:218313_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133_PLUS_2:218313_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-FOCUS:218313_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133A_2:218313_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
U133_X3P:G8393408_3P_A_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
U133_X3P:HS.246315.0.S1_3P_A_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U95C:60827_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U95C:62508_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133_PLUS_2:216756_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133A_2:216756_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133A:216756_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
U133_X3P:HS2.365191.1.S1_3P_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
U133_X3P:HS.306739.0.S1_3P_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
U133_X3P:HS.120361.0.A1_3P_S_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
U133_X3P:HS.120361.0.A1_3P_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133_PLUS_2:1557878_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133_PLUS_2:240212_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133B:240212_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U95D:76223_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133_PLUS_2:216757_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133A_2:216757_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U133A:216757_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U95C:59101_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
HG-U95D:71265_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) hs
MG-U74BV2:113740_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MG-U74CV2:129343_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MG-U74BV2:163865_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MOE430A:1425581_S_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MOUSE430A_2:1425581_S_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MOUSE430_2:1425581_S_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MOE430A:1452232_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MOUSE430A_2:1452232_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MOUSE430_2:1452232_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MOE430A:1426908_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MOUSE430A_2:1426908_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MOUSE430_2:1426908_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 mm
MG-U74BV2:104823_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), mRNA mm
MOE430B:1458264_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), mRNA mm
MOUSE430_2:1458264_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), mRNA mm
MG-U74BV2:111617_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), mRNA mm
MOE430B:1445598_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), mRNA mm
MOUSE430_2:1445598_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), mRNA mm
MU19KSUBB:TC27299_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), mRNA mm
MU19KSUBB:TC33079_AT UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), mRNA mm
RAE230A:1369431_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
RAT230_2:1369431_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
RAE230B:1379158_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
RAT230_2:1379158_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
RAE230B:1393485_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
RAT230_2:1393485_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
RAE230B:1395099_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
RAT230_2:1395099_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
RG-U34B:RC_AI070164_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
RG-U34C:RC_AI072888_AT UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) rn
Protein Similarities
Method ID Description E-Value
blast NP_503512 Y46H3A.6 [Caenorhabditis elegans] gb|AAF60620.1| Glycosylation related protein 7 [Caenorhabditis elegans] sp|O61397|GALT7_CAEEL Probable N-acetylgalactosaminyltransferase 7 (Protein-UDP acetylgalactosaminyltransferase 7) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 7) (pp-GaNTase 7) gb|AAC13677.1| GLY7 [Caenorhabditis elegans] 0.0
blast CAE74136 Hypothetical protein CBG21807 [Caenorhabditis briggsae] 0.0
blast EAA06901 ENSANGP00000019085 [Anopheles gambiae str. PEST] ref|XP_311182.2| ENSANGP00000019085 [Anopheles gambiae str. PEST] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 5.0E-7
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 6.9E-34
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 5.0E-7
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 6.9E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503512.1 1 21-38
Y46H3A.6 1 21-38
GENEFINDER00000020858 1 60-77
Sequence
Target Sequence 
>C. ELEGANS:173451_S_AT
ctggaccaatgggagcgaccggatgtcatggatatggtggaaatcagcttatcagattga
atgttcaaggacagatggctcaaggagaatggtgtctgactgcgaatggaattcgaattc
aggcgaatcactgtgtcaaggggacggtcaacggattttggtcttatgacaggaaaacca
aacaaatcatccacagccaaaagcgacagtgtataacagtatccgaatcgggatcagaag
ttacgttgcaaacgtgcacagaagacaacgaacgacagaagtttgtatggaaagaatttt
atcaatccagctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGACCAATGGGAGCGACCGGATG 301 241 1506 Antisense
GGAGCGACCGGATGTCATGGATATG 355 521 1517 Antisense
GTTCAAGGACAGATGGCTCAAGGAG 700 441 1568 Antisense
TGGTGTCTGACTGCGAATGGAATTC 236 551 1595 Antisense
GAATTCAGGCGAATCACTGTGTCAA 126 325 1620 Antisense
GTGTCAAGGGGACGGTCAACGGATT 554 427 1638 Antisense
AACGGATTTTGGTCTTATGACAGGA 96 141 1655 Antisense
AAACCAAACAAATCATCCACAGCCA 388 125 1680 Antisense
CATCCACAGCCAAAAGCGACAGTGT 372 211 1693 Antisense
GTGTATAACAGTATCCGAATCGGGA 18 485 1714 Antisense
GAAAGAATTTTATCAATCCAGCTAA 562 359 1795 Antisense
Sequence Source GenBank