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[173448_s_at] adducin

Description g5734149 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F57F5.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F57F5.4 /WP=CE06002 /CHR=5 /FEA=Genomic Cluster /GEN=add-2 /DEF=adducin-head-domain-related protein; adducin
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 88      6grp_total > 86      4grp_total > 03      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1100
1 2 3 4 range
A 720
(-2.3)
P 		595.7
(-3)
P 		591.3
(-3)
P 		1668.3
(3)
P 		1077
B 770.5
(-1.8)
P 		751.6
(-1.9)
P 		568.1
(-3)
P 		1544.3
(3)
P 		976
C 740.9
(-2.9)
P 		731.6
(-3)
P 		797.9
(-2.4)
P 		1425.9
(3)
P 		694
avr 743.8
(-2.4) 		693
(-2.7) 		652.4
(-3) 		1546.2
(3) 		894

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1156
1 2 3 4 5 6 range
A 807.5
(-3)
P 		946.1
(-1.9)
P 		1088.5
(-0.7)
P 		1281.7
(0.8)
P 		1345
(1.3)
P 		1554.2
(3)
P 		747
B 808.2
(-3)
P 		984.3
(-1.9)
P 		1088.2
(-1.3)
P 		1064.1
(-1.5)
P 		1522.3
(1.3)
P 		1804.2
(3)
P 		996
C 726.3
(-3)
P 		940.8
(-1.9)
P 		970.6
(-1.7)
P 		1243.2
(-0.3)
P 		1285.1
(-0.1)
P 		1882.1
(3)
P 		1156
avr 780.7
(-3) 		957.1
(-1.9) 		1049.1
(-1.3) 		1196.3
(-0.4) 		1384.1
(0.7) 		1746.8
(3) 		966
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 262.1
(3)
P 		129.3
(-3)
P 		154.6
(-1.9)
P 		244.2
(2.2)
P 		133
B 245.7
(0.5)
P 		185.6
(-1.4)
P 		131.6
(-3)
P 		329.1
(3)
P 		198
C 245.3
(0.1)
P 		210.4
(-3)
P 		278.1
(3)
P 		240.4
(-0.3)
P 		68
avr 251
(1.7) 		175.1
(-3) 		188.1
(-2.2) 		271.2
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 148.8
(-3)
P 		336.5
(1.4)
P 		237
(-0.9)
P 		325.1
(1.1)
P 		405.8
(3)
P 		378.4
(2.4)
P 		257
B 281.2
(-2.8)
P 		327.6
(-2.1)
P 		264.2
(-3)
P 		281.9
(-2.7)
P 		618.5
(2.2)
P 		672.8
(3)
P 		409
C 269.2
(-2.7)
P 		287.1
(-2.4)
P 		247
(-3)
P 		250
(-3)
P 		415.8
(-0.4)
P 		630.1
(3)
P 		383
avr 233.1
(-3) 		317.1
(-1.5) 		249.4
(-2.7) 		285.7
(-2) 		480
(1.5) 		560.4
(3) 		327
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173448_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25631
Sequence Type Exemplar sequence
Representative Public ID 5734149 NCBI
Target Description g5734149 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F57F5.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F57F5.4 /WP=CE06002 /CHR=5 /FEA=Genomic Cluster /GEN=add-2 /DEF=adducin-head-domain-related protein; adducin
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073612(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073612 NCBI Caenorhabditis elegans F57F5.4 (adducin) mRNA, complete cds. 11/11 None
SNAP00000039444 ENSEMBL cdna:SNAP chromosome:CEL140:V:12012243:12015994:-1 11/11 None
GENEFINDER00000039447 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12012243:12015994:-1 11/11 None
F57F5.4.1 ENSEMBL cdna:known chromosome:CEL140:V:12012133:12016124:-1 gene:F57F5.4 11/11 None
F57F5.4.2 ENSEMBL cdna:known chromosome:CEL140:V:12012243:12016193:-1 gene:F57F5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12012243-12015995(-) 100.0 100.0
Public Domain and Genome References
Gene Title adducin
Gene Symbol add-2
Ensembl F57F5.4
Entrez Gene 179647 Entrez gene
SwissProt Q20952 EMBL-EBI
WormBase CE06002 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30866 cortical actin cytoskeleton organization and biogenesis inferred from sequence similarity QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30864 cortical actin cytoskeleton inferred from sequence similarity QuickGO AmiGO
5913 cell-cell adherens junction inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00100 Hypothetical protein F57F5.4 [Caenorhabditis elegans] ref|NP_506013.3| F57F5.4 [Caenorhabditis elegans] gb|AAD49860.1| adducin-head-domain-related protein [Caenorhabditis elegans] sp|Q20952|ADD2_CAEEL Adducin-related protein 0.0
blast CAE75369 Hypothetical protein CBG23353 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001303 EMBL-EBI Class II aldolase/adducin, N-terminal 4.2E-75
Sequence
Target Sequence 
>C. ELEGANS:173448_S_AT
tgaagtcagtgcatcgtcgcttattaaagtagatctagacggaactgtaattgatggtgg
ttcaactaattttggagtgaatcaagctggttatgtacttcattcggcaattcataatgg
tcgtccagaggttaagtgtgttgtacatcttcatcatccatcagttgttgctgtttcggc
tcaaaagtgtggacttcttccaattagtcaagagtcaatgattgttggagatgttggata
tcatgaatatcggggaatcctgatcgacgaagcggaacgtgcgttgctcgtccgtgactt
gggtgatcgaaatgtgatgattcttcgtaaccacggattcgttgtttgtggagagtctat
cgaacatgctcttagcctaacttatcatttaattattgcgtgtgaaacacaaattagaac
ggttcccggcgggaacacggacaacgtgcattttccagcgcaatccgcaatcaaacaggt
ttacaaagtcgccagtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGTCAGTGCATCGTCGCTTATT 228 575 1219 Antisense
GCTGGTTATGTACTTCATTCGGCAA 267 295 1304 Antisense
GTGTTGTACATCTTCATCATCCATC 423 485 1356 Antisense
TCAGTTGTTGCTGTTTCGGCTCAAA 432 623 1379 Antisense
CGAAGCGGAACGTGCGTTGCTCGTC 184 247 1486 Antisense
GCTCGTCCGTGACTTGGGTGATCGA 332 299 1504 Antisense
GATTCTTCGTAACCACGGATTCGTT 367 431 1537 Antisense
GAGTCTATCGAACATGCTCTTAGCC 691 399 1571 Antisense
TCCCGGCGGGAACACGGACAACGTG 592 225 1642 Antisense
GCATTTTCCAGCGCAATCCGCAATC 493 307 1666 Antisense
ACAGGTTTACAAAGTCGCCAGTCAA 182 93 1693 Antisense
Sequence Source GenBank