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[173445_s_at]

Description g4558870 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F44B9.6 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F44B9.6 /WP=CE00175 /CHR=3 /FEA=Genomic Cluster /GEN=lin-36 /DEF=LIN-36
Cluster 6grp_high1_10_10 > 58      4grp_high_8_8 > 07      6grp_total > 59      4grp_total > 0      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 111.2
(3)
P 		89.9
(1.1)
P 		102.3
(2.2)
P 		44.9
(-3)
A 		66
B 102.8
(-2.2)
P 		93
(-3)
P 		106.9
(-1.9)
P 		169.4
(3)
P 		76
C 78.6
(-3)
P 		85.3
(-1.4)
P 		100.1
(2.1)
P 		104
(3)
P 		25
avr 97.5
(-0.1) 		89.4
(-3) 		103.1
(1.9) 		106.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 149.1
(0.4)
P 		144.7
(0.2)
P 		97.8
(-2.2)
P 		83.4
(-3)
P 		141.3
(0)
P 		198
(3)
P 		115
B 155.5
(1.5)
P 		123.3
(-0.5)
P 		80.9
(-3)
P 		125.4
(-0.3)
P 		138.3
(0.5)
P 		180.7
(3)
P 		100
C 167.8
(-0)
P 		111.2
(-2.4)
P 		96.2
(-3)
M 		96.2
(-3)
P 		144.2
(-1)
P 		239.7
(3)
P 		144
avr 157.5
(0.5) 		126.4
(-1.2) 		91.6
(-3) 		101.7
(-2.5) 		141.3
(-0.4) 		206.1
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 40.5
(3)
P 		19.5
(-0.7)
P 		26.7
(0.6)
P 		6.6
(-3)
A 		34
B 32.8
(1.5)
P 		23
(-3)
P 		24.8
(-2.2)
P 		36.1
(3)
P 		13
C 26
(-0.1)
P 		24.5
(-0.6)
P 		34.9
(3)
P 		17.5
(-3)
P 		17
avr 33.1
(3) 		22.3
(-2) 		28.8
(1) 		20.1
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 27.5
(-1.7)
P 		51.5
(3)
P 		21.3
(-3)
P 		21.1
(-3)
P 		42.6
(1.2)
P 		48.2
(2.3)
P 		30
B 54.1
(1.3)
P 		41
(-0.3)
P 		19.6
(-3)
P 		33.2
(-1.3)
P 		56.2
(1.6)
P 		67.4
(3)
P 		48
C 62.2
(1.2)
P 		33.9
(-1.6)
P 		24.5
(-2.5)
M 		19.3
(-3)
P 		46.7
(-0.3)
P 		80.3
(3)
P 		61
avr 47.9
(0.6) 		42.1
(-0.2) 		21.8
(-3) 		24.5
(-2.6) 		48.5
(0.7) 		65.3
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173445_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23834
Sequence Type Exemplar sequence
Representative Public ID 4558870 NCBI
Target Description g4558870 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F44B9.6 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F44B9.6 /WP=CE00175 /CHR=3 /FEA=Genomic Cluster /GEN=lin-36 /DEF=LIN-36
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066346 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-36) (lin-36) mRNA, complete cds. 11/11 A 
F44B9.6 ENSEMBL cdna:known chromosome:CEL140:III:8016572:8020797:-1 gene:F44B9.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8016683-8020793(-) 98.8 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lin-36
Ensembl F44B9.6
Entrez Gene 176128 Entrez gene
SwissProt P34427 EMBL-EBI
WormBase CE30992 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28031 Abnormal cell lineage protein 36 [Caenorhabditis elegans] ref|NP_498747.2| abnormal cell LINeage family member (lin-36) [Caenorhabditis elegans] gb|AAD22772.1| LIN-36 [Caenorhabditis elegans] sp|P34427|LIN36_CAEEL Abnormal cell lineage protein 36 (Protein lin-36) 0.0
blast S44812 F44B9.6 protein - Caenorhabditis elegans 0.0
blast CAE75048 Hypothetical protein CBG22961 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173445_S_AT
aagtgcctcaaaattcaagattcaaaagtcaattgtcctttcgaggatcgccccacattt
ctttcatgtgaactatctctgttttatatccacagaagttatcccattttactttcattc
gaaattcttgaaatctgataaaaactccgactaggatagattttcgtctagatttttagg
attttcacatttacttttttcccattttttaccccccctcccccctataatttactttcc
aaaattaatagtttgttttactttccataagcccccgccccctccccaaaaaccacactt
tttctatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGCCTCAAAATTCAAGATTCAA 120 159 2917 Antisense
TCAATTGTCCTTTCGAGGATCGCCC 367 633 2945 Antisense
TCGCCCCACATTTCTTTCATGTGAA 655 599 2964 Antisense
GAACTATCTCTGTTTTATATCCACA 74 351 2986 Antisense
ATATCCACAGAAGTTATCCCATTTT 418 21 3002 Antisense
GAAGTTATCCCATTTTACTTTCATT 509 335 3011 Antisense
AATCTGATAAAAACTCCGACTAGGA 329 169 3048 Antisense
ACTCCGACTAGGATAGATTTTCGTC 127 1 3060 Antisense
GATTTTCGTCTAGATTTTTAGGATT 217 425 3075 Antisense
GATTTTTAGGATTTTCACATTTACT 465 427 3087 Antisense
CCAAAAACCACACTTTTTCTATCAT 307 273 3202 Antisense
Sequence Source GenBank