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[173444_s_at] MAGO NASHI PROTEIN

Description g2306970 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=R09B3.5 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=R09B3.5 /WP=CE16310 /CHR=1 /FEA=Genomic Cluster /DEF=MAGO NASHI PROTEIN
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 45      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 67      6grp_total > 35      4grp_total > 58      6grp_highest_sub > Cu      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1823
1 2 3 4 range
A 2007.7
(-0.8)
P 		1958.2
(-1)
P 		3043.9
(3)
P 		1406.3
(-3)
P 		1638
B 1665.8
(-1.9)
P 		2951.7
(3)
P 		2574
(1.6)
P 		1367.8
(-3)
P 		1584
C 2095
(0.8)
P 		2420.2
(2.1)
P 		2618.3
(3)
P 		1220.8
(-3)
P 		1398
avr 1922.8
(-0.5) 		2443.4
(1.7) 		2745.4
(3) 		1331.6
(-3) 		1414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 681
1 2 3 4 5 6 range
A 1628.7
(0)
P 		1903.4
(3)
P 		1869.9
(2.6)
P 		1746.4
(1.3)
P 		1346.4
(-3)
P 		1692.3
(0.7)
P 		557
B 2027.2
(3)
P 		1827.2
(1.1)
P 		1707.2
(-0)
P 		1758.4
(0.5)
P 		1394.4
(-3)
P 		1616.6
(-0.9)
P 		633
C 1896.7
(2.1)
P 		1977.2
(3)
P 		1866.7
(1.7)
P 		1596.6
(-1.3)
P 		1449
(-3)
P 		1909.2
(2.2)
P 		528
avr 1850.9
(2.4) 		1902.6
(3) 		1814.6
(2) 		1700.5
(0.6) 		1396.6
(-3) 		1739.4
(1.1) 		506
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 707
1 2 3 4 range
A 731
(2.3)
P 		425.1
(-0.8)
P 		795.7
(3)
P 		205.9
(-3)
P 		590
B 531.2
(0.3)
P 		729
(3)
P 		596.4
(1.2)
P 		291.5
(-3)
P 		438
C 693.5
(1.1)
P 		695.8
(1.2)
P 		912.6
(3)
P 		205.8
(-3)
P 		707
avr 651.9
(1.7) 		616.6
(1.3) 		768.2
(3) 		234.4
(-3) 		534

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 300.2
(-3)
P 		676.9
(3)
P 		407.2
(-1.3)
P 		442.9
(-0.7)
P 		406.3
(-1.3)
P 		412
(-1.2)
P 		377
B 705.4
(3)
P 		608.2
(1)
P 		414.6
(-3)
P 		465.7
(-1.9)
P 		566.5
(0.1)
P 		602.8
(0.9)
P 		291
C 703
(3)
P 		603.3
(1.4)
P 		475.1
(-0.6)
P 		321.1
(-3)
P 		468.9
(-0.7)
P 		639.1
(2)
P 		382
avr 569.5
(1.4) 		629.5
(3) 		432.3
(-2.4) 		409.9
(-3) 		480.6
(-1.1) 		551.3
(0.9) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173444_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22892
Sequence Type Exemplar sequence
Representative Public ID 2306970 NCBI
Target Description g2306970 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=R09B3.5 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=R09B3.5 /WP=CE16310 /CHR=1 /FEA=Genomic Cluster /DEF=MAGO NASHI PROTEIN
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060624(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060624 NCBI Caenorhabditis elegans Drosophila MAGonashi homolog family member (mag-1) (mag-1) mRNA, complete cds. 11/11 None
SNAP00000010423 ENSEMBL cdna:SNAP chromosome:CEL140:I:11920269:11920798:-1 11/11 None
GENEFINDER00000010429 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11920269:11920798:-1 11/11 None
R09B3.5.2 ENSEMBL cdna:known chromosome:CEL140:I:11920127:11920799:-1 gene:R09B3.5 11/11 None
R09B3.5.1 ENSEMBL cdna:known chromosome:CEL140:I:11920142:11920801:-1 gene:R09B3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11920144-11920730(-) 100.0 100.0
Public Domain and Genome References
Gene Title MAGO NASHI PROTEIN
Gene Symbol mag-1
Ensembl R09B3.5
Entrez Gene 173073 Entrez gene
SwissProt P49029 EMBL-EBI
WormBase CE16310 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264152_AT mago nashi family protein at
ATGENOME1:15020_AT mago nashi family protein at
CANINE:1584290_AT similar to Mago nashi protein homolog cfa
CANINE_2:CFA.11345.1.A1_S_AT similar to Mago nashi protein homolog cfa
CANINE_2:CFAAFFX.29249.1.S1_AT similar to Mago nashi protein homolog cfa
DROSOPHILA_2:1636919_AT mago nashi dm
DROSGENOME1:143262_AT mago nashi dm
CHICKEN:GGA.1861.1.S1_AT mago-nashi homolog, proliferation-associated (Drosophila) gga
HG-U133A:210092_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U133_PLUS_2:210092_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U133A_2:210092_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U133_PLUS_2:210093_S_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U133A:210093_S_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-FOCUS:210093_S_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U133A_2:210093_S_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U95C:63842_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HU35KSUBC:RC_W67810_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HU35KSUBC:RC_AA284742_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
U133_X3P:G4894379_3P_A_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U95AV2:40036_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U95C:57944_AT mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U95C:63496_AT Mago-nashi homolog, proliferation-associated (Drosophila) hs
HG-U95D:70959_AT Mago-nashi homolog, proliferation-associated (Drosophila) hs
HU35KSUBD:RC_N68201_AT Mago-nashi homolog, proliferation-associated (Drosophila) hs
MU11KSUBA:AF007862_S_AT mago-nashi homolog, proliferation-associated (Drosophila) mm
MG-U74AV2:160550_I_AT mago-nashi homolog, proliferation-associated (Drosophila) mm
MOE430A:1416212_AT mago-nashi homolog, proliferation-associated (Drosophila) mm
MOUSE430A_2:1416212_AT mago-nashi homolog, proliferation-associated (Drosophila) mm
MOUSE430_2:1416212_AT mago-nashi homolog, proliferation-associated (Drosophila) mm
RG-U34C:RC_AI112365_AT mago-nashi homolog, proliferation-associated (Drosophila) (predicted) rn
RAE230A:1372815_AT mago-nashi homolog, proliferation-associated (Drosophila) (predicted) rn
RAT230_2:1372815_AT mago-nashi homolog, proliferation-associated (Drosophila) (predicted) rn
RG-U34C:RC_AI230332_AT Mago-nashi homolog, proliferation-associated (Drosophila) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7530 sex determination inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03239 Hypothetical protein R09B3.5 [Caenorhabditis elegans] ref|NP_493025.1| Drosophila MAGonashi homolog family member (mag-1) [Caenorhabditis elegans] sp|P49029|MGN_CAEEL Mago nashi protein homolog (Ce-mago) 1.0E-84
blast CAE71713 Hypothetical protein CBG18690 [Caenorhabditis briggsae] 4.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR004023 EMBL-EBI Mago nashi protein 1.5E-120
Sequence
Target Sequence 
>C. ELEGANS:173444_S_AT
agaaggcagcggacttttacgttcgttactacgttggacacaagggaaaattcggtcacg
aatttctcgaattcgaattccgtccaaacggatcgcttcgctacgcgaacaactccaact
acaagaatgacacgatgatccgcaaagaggcgacagtgtcggaatcggtgctcagcgagc
tcaagcgtatcatcgaagactcggaaatcatgcaggaggacgatgacaattggccagaac
cagacaagattggacgccaggagctggaaattctgtacaaaaacgagcacatctcgttta
cgaccggcaaaatcggagctctagccgatgtgaacaactcgaaagatccggatggtctcc
gctcgttctactatctcgttcaggatctcaagtgcctcgtcttctcgctcattggccttc
acttcaagatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGGCAGCGGACTTTTACGTTCG 432 75 30 Antisense
TTCCGTCCAAACGGATCGCTTCGCT 523 693 107 Antisense
CTACGCGAACAACTCCAACTACAAG 23 227 130 Antisense
GACAGTGTCGGAATCGGTGCTCAGC 709 367 181 Antisense
GTGCTCAGCGAGCTCAAGCGTATCA 273 479 197 Antisense
GGACGATGACAATTGGCCAGAACCA 495 523 247 Antisense
GGAGCTCTAGCCGATGTGAACAACT 125 521 344 Antisense
CGAAAGATCCGGATGGTCTCCGCTC 356 251 369 Antisense
CTCGTTCTACTATCTCGTTCAGGAT 692 231 391 Antisense
CGTTCAGGATCTCAAGTGCCTCGTC 308 247 406 Antisense
CTCATTGGCCTTCACTTCAAGATCA 632 229 437 Antisense
Sequence Source GenBank