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[173442_at] myosin IA

Description g414639 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=T02C12.1 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=T02C12.1 /WP=CE01061 /CHR=3 /FEA=Genomic Cluster /GEN=hum-5 /DEF=myosin IA
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 76      6grp_total > 02      4grp_total > 07      6grp_highest_sub > 01_02      6grp_cgc > 43      6grp_high1_sub > 01_02      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 674
1 2 3 4 range
A 1209.1
(2.1)
P 		773.3
(-3)
P 		1289
(3)
P 		972.3
(-0.7)
P 		516
B 1356.4
(0.2)
P 		1251.6
(-3)
P 		1320.9
(-0.9)
P 		1447.2
(3)
P 		196
C 1402.4
(2.8)
P 		1025.5
(-3)
P 		1407.9
(2.9)
P 		1413
(3)
P 		388
avr 1322.6
(2.7) 		1016.8
(-3) 		1339.3
(3) 		1277.5
(1.9) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 822
1 2 3 4 5 6 range
A 1196.2
(0.5)
P 		1517.3
(3)
P 		1121.7
(-0)
P 		737.8
(-3)
P 		1220.2
(0.7)
P 		1100.3
(-0.2)
P 		780
B 1296.9
(1)
P 		1559.5
(3)
P 		762.7
(-3)
P 		1431.1
(2)
P 		983.3
(-1.3)
P 		1128.5
(-0.2)
P 		797
C 1514.6
(3)
P 		1320.7
(0.8)
P 		1122
(-1.4)
P 		1132.6
(-1.3)
P 		1114.4
(-1.5)
P 		982.5
(-3)
P 		532
avr 1335.9
(1.3) 		1465.8
(3) 		1002.1
(-3) 		1100.5
(-1.7) 		1106
(-1.7) 		1070.4
(-2.1) 		464
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 440.2
(3)
P 		167.9
(-2.5)
P 		337
(0.9)
P 		142.3
(-3)
P 		298
B 432.6
(3)
P 		309.1
(-2.9)
P 		306.1
(-3)
P 		308.4
(-2.9)
P 		127
C 464.2
(2.4)
P 		294.8
(-1.7)
P 		490.7
(3)
P 		238.3
(-3)
P 		252
avr 445.7
(3) 		257.3
(-2.2) 		377.9
(1.1) 		229.7
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 220.5
(-2.4)
P 		539.6
(3)
P 		244.3
(-2)
P 		187.1
(-3)
P 		368.2
(0.1)
P 		267.9
(-1.6)
P 		353
B 451.3
(1.8)
P 		519.1
(3)
P 		185.2
(-3)
P 		379
(0.5)
P 		399.5
(0.9)
P 		420.8
(1.2)
P 		334
C 561.4
(3)
P 		403
(0.2)
P 		285.6
(-2)
P 		227.8
(-3)
P 		360.6
(-0.6)
P 		328.9
(-1.2)
P 		334
avr 411.1
(1.2) 		487.2
(3) 		238.4
(-3) 		264.6
(-2.4) 		376.1
(0.3) 		339.2
(-0.6) 		249
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24240
Sequence Type Exemplar sequence
Representative Public ID 414639 NCBI
Target Description g414639 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=T02C12.1 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=T02C12.1 /WP=CE01061 /CHR=3 /FEA=Genomic Cluster /GEN=hum-5 /DEF=myosin IA
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065408 NCBI Caenorhabditis elegans Heavy chain, Unconventional Myosin family member (hum-5) (hum-5) mRNA, complete cds. 11/11 A 
T02C12.1.1 ENSEMBL cdna:known chromosome:CEL140:III:4029086:4036816:-1 gene:T02C12.1 11/11 None
T02C12.1.2 ENSEMBL cdna:known chromosome:CEL140:III:4029110:4036811:-1 gene:T02C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4029108-4036805(-) 100.0 100.0
Public Domain and Genome References
Gene Title myosin IA
Gene Symbol hum-5
Ensembl T02C12.1
Entrez Gene 175521 Entrez gene
SwissProt Q27328 EMBL-EBI
WormBase CE01061 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.28119.1.S1_AT similar to Myosin Id cfa
DROSOPHILA_2:1641074_S_AT Myosin 31DF dm
DROSGENOME1:142975_AT Myosin 31DF dm
CHICKEN:GGA.7191.1.S1_AT similar to Myosin Id gga
CHICKEN:GGAAFFX.26666.1.S1_S_AT similar to Myosin Id gga
CHICKEN:GGAAFFX.26666.2.S1_AT similar to Myosin Id gga
CHICKEN:GGAAFFX.426.1.S1_S_AT similar to Myosin Id gga
CHICKEN:GGAAFFX.426.2.S1_S_AT similar to Myosin Id gga
HU35KSUBC:RC_N26257_AT myosin ID hs
U133_X3P:HS2.39871.1.S1_3P_AT myosin ID hs
U133_X3P:HS.39871.0.S1_3P_AT myosin ID hs
HG-U133_PLUS_2:1555397_AT myosin ID hs
HG-U133A_2:212338_AT myosin ID hs
HG-U133_PLUS_2:212338_AT myosin ID hs
HG-U133A:212338_AT myosin ID hs
HG-U95AV2:35729_AT myosin ID hs
HG-U133_PLUS_2:241210_AT Myosin ID hs
HG-U133B:241210_AT Myosin ID hs
HG-U133_PLUS_2:241645_AT Myosin ID hs
HG-U133B:241645_AT Myosin ID hs
HG-U133_PLUS_2:241651_AT Myosin ID hs
HG-U133B:241651_AT Myosin ID hs
HG-U133_PLUS_2:243732_AT Myosin ID hs
HG-U133B:243732_AT Myosin ID hs
HG-U95C:49859_AT Myosin ID hs
HG-U95C:54252_R_AT Myosin ID hs
HG-U95E:67073_AT Myosin ID hs
HG-U95E:84144_AT Myosin ID hs
HG-U95E:85434_AT Myosin ID hs
HU35KSUBB:RC_T95079_AT Myosin ID hs
U133_X3P:HS.179872.0.A1_3P_AT Myosin ID hs
U133_X3P:HS.270036.0.A1_3P_AT Myosin ID hs
U133_X3P:HS.293467.0.A1_3P_AT Myosin ID hs
U133_X3P:HS.293467.0.S1_3P_AT Myosin ID hs
MU11KSUBA:AA543807_S_AT myosin ID mm
MG-U74AV2:93427_AT myosin ID mm
MOE430A:1435463_S_AT myosin ID mm
MOUSE430A_2:1435463_S_AT myosin ID mm
MOUSE430_2:1435463_S_AT myosin ID mm
MOE430B:1458550_AT myosin ID mm
MOUSE430_2:1458550_AT myosin ID mm
MOE430B:1435046_AT Myosin ID (Myo1d), mRNA mm
MOUSE430_2:1435046_AT Myosin ID (Myo1d), mRNA mm
MOUSE430_2:1444515_AT Myosin ID (Myo1d), mRNA mm
MOE430B:1444515_AT Myosin ID (Myo1d), mRNA mm
MOE430B:1459102_AT Myosin ID (Myo1d), mRNA mm
MOUSE430_2:1459102_AT Myosin ID (Myo1d), mRNA mm
RG-U34A:X71997_AT myosin IC rn
RG-U34B:RC_AA900847_AT myosin IC rn
RAE230A:1388917_AT myosin IC rn
RAT230_2:1388917_AT myosin IC rn
RAE230A:1369779_AT myosin IC rn
RAT230_2:1369779_AT myosin IC rn
RAE230B:1390970_AT Myosin IC rn
RAT230_2:1390970_AT Myosin IC rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16459 myosin inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84673 Hypothetical protein T02C12.1 [Caenorhabditis elegans] emb|CAA53244.1| myosin IA [Caenorhabditis elegans] ref|NP_497809.1| Heavy chain, Unconventional Myosin family member (hum-5) [Caenorhabditis elegans] 0.0
blast CAE72880 Hypothetical protein CBG20192 [Caenorhabditis briggsae] 0.0
blast XP_688008 PREDICTED: similar to Myosin Id [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 1.0E-126
Pfam IPR010926 EMBL-EBI Myosin tail 2 7.7E-74
Sequence
Target Sequence 
>C. ELEGANS:173442_AT
gctcaagttgcttgatttcccttgaatttgttttttttcctatttccaaaattttaatgt
attgccagttttattatcgacggttagttacttcctctcccatccccttcacctctgcct
ttttctcaacaattactattttttcatttttctcccggaataagtctagtctattgctct
tccttttttacatgctcattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAAGTTGCTTGATTTCCCTTGA 682 301 3053 Antisense
GCTTGATTTCCCTTGAATTTGTTTT 403 303 3062 Antisense
TCCAAAATTTTAATGTATTGCCAGT 648 587 3097 Antisense
ATTGCCAGTTTTATTATCGACGGTT 340 7 3113 Antisense
TATCGACGGTTAGTTACTTCCTCTC 470 653 3127 Antisense
TCTGCCTTTTTCTCAACAATTACTA 173 609 3166 Antisense
TTCATTTTTCTCCCGGAATAAGTCT 370 687 3195 Antisense
TTTCTCCCGGAATAAGTCTAGTCTA 667 623 3201 Antisense
TAAGTCTAGTCTATTGCTCTTCCTT 433 637 3213 Antisense
ATTGCTCTTCCTTTTTTACATGCTC 256 7 3225 Antisense
TCTTCCTTTTTTACATGCTCATTAA 548 617 3230 Antisense
Sequence Source GenBank