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[173439_at]

Description g2226359-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g2226359 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /GEN=daf-3 /DEF=DAF-3
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 10      6grp_total > 26      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1581
1 2 3 4 range
A 2596.8
(3)
P 		1685.2
(-0.7)
P 		1233.2
(-2.5)
P 		1120.6
(-3)
P 		1476
B 2701.6
(3)
P 		1526.8
(-2)
P 		1303.8
(-3)
P 		1664.1
(-1.5)
P 		1398
C 2597
(3)
P 		1626.9
(-1)
P 		1447.3
(-1.7)
P 		1127.3
(-3)
P 		1470
avr 2631.8
(3) 		1613
(-1.6) 		1328.1
(-2.9) 		1304
(-3) 		1328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1195
1 2 3 4 5 6 range
A 2046.9
(3)
P 		1817.3
(1.8)
P 		1007.6
(-2.5)
P 		921.9
(-2.9)
P 		911.7
(-3)
P 		1209.8
(-1.4)
P 		1135
B 2070.1
(3)
P 		1616.6
(0.6)
P 		1437.2
(-0.3)
P 		1180.7
(-1.7)
P 		935.4
(-3)
P 		1151.1
(-1.9)
P 		1135
C 2019.5
(3)
P 		1439.3
(-0)
P 		1240.8
(-1.1)
P 		875.1
(-3)
P 		932.1
(-2.7)
P 		1198.5
(-1.3)
P 		1144
avr 2045.5
(3) 		1624.4
(0.7) 		1228.5
(-1.4) 		992.6
(-2.6) 		926.4
(-3) 		1186.5
(-1.6) 		1119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 782
1 2 3 4 range
A 945.5
(3)
P 		365.8
(-1.5)
P 		322.4
(-1.8)
P 		164
(-3)
P 		782
B 861.5
(3)
P 		377.1
(-2.2)
P 		302.1
(-3)
P 		354.6
(-2.4)
P 		559
C 859.7
(3)
P 		467.7
(-0.5)
P 		504.4
(-0.2)
P 		190.1
(-3)
P 		670
avr 888.9
(3) 		403.5
(-1.5) 		376.3
(-1.7) 		236.2
(-3) 		653

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 573
1 2 3 4 5 6 range
A 377.3
(-0.8)
P 		646.3
(3)
P 		219.4
(-3)
P 		233.8
(-2.8)
P 		275.1
(-2.2)
P 		294.6
(-1.9)
P 		427
B 720.3
(3)
P 		538.1
(0.3)
P 		349
(-2.5)
P 		312.7
(-3)
P 		380.1
(-2)
P 		429.2
(-1.3)
P 		408
C 748.5
(3)
P 		439.2
(-0.2)
P 		315.8
(-1.5)
P 		176
(-3)
P 		301.6
(-1.7)
P 		401.2
(-0.6)
P 		573
avr 615.4
(3) 		541.2
(1.8) 		294.7
(-2.1) 		240.8
(-3) 		318.9
(-1.7) 		375
(-0.9) 		375
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173439_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26247
Sequence Type Exemplar sequence
Representative Public ID 2226359 NCBI
Target Description g2226359-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g2226359 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /GEN=daf-3 /DEF=DAF-3
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029434(11), NM_001029433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029434 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-3) (daf-3) mRNA, complete cds. 11/11 None
NM_001029433 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-3) (daf-3) mRNA, complete cds. 11/11 None
F25E2.5c ENSEMBL cdna:known chromosome:CEL140:X:817926:823840:-1 gene:F25E2.5 11/11 A 
F25E2.5b ENSEMBL cdna:known chromosome:CEL140:X:817951:825472:-1 gene:F25E2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180431 3 2 NM_001029433 173439_at (11)
NM_001029434 173439_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:817926-823841(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25E2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54189 Abnormal dauer formation protein 3, isoform c [Caenorhabditis elegans] ref|NP_001024605.1| abnormal DAuer Formation family member (daf-3) [Caenorhabditis elegans] gb|AAB61748.1| DAF-3 [Caenorhabditis elegans] 0.0
blast AAK68348 Abnormal dauer formation protein 3, isoform a [Caenorhabditis elegans] ref|NP_508161.3| abnormal DAuer Formation family member (daf-3) [Caenorhabditis elegans] 0.0
blast AAM54188 Abnormal dauer formation protein 3, isoform b [Caenorhabditis elegans] ref|NP_001024604.1| abnormal DAuer Formation family member (daf-3) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003619 EMBL-EBI Dwarfin protein, domain A 3.3E-56
Pfam IPR001132 EMBL-EBI Dwarfin protein 1.0E-123
Pfam IPR003619 EMBL-EBI Dwarfin protein, domain A 8.0E-54
Pfam IPR001132 EMBL-EBI Dwarfin protein 1.0E-123
Sequence
Target Sequence 
>C. ELEGANS:173439_AT
atgataacttttttcactcaccctactagatactgatttagtcttattccaaatcatcca
acgatatcaaactttttcctttgaactttgcatactatgttatcacaagttccaagcagt
ttcaatacaaacataggatatgttaacaacttttgataagaatcaagttaccaactgttc
attgtgagctttgagctgtatagaaggacaatgtatcccatacctcaatctttaatagtc
atcagtcactggtcccgcaccaattttttcgattcgcatatgtcatatattgcaccgtgg
ccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATAACTTTTTTCACTCACCCTA 559 45 2405 Antisense
TTCACTCACCCTACTAGATACTGAT 578 685 2417 Antisense
AGTCTTATTCCAAATCATCCAACGA 530 61 2444 Antisense
TCCAACGATATCAAACTTTTTCCTT 82 587 2461 Antisense
TTTTCCTTTGAACTTTGCATACTAT 392 675 2478 Antisense
ATCACAAGTTCCAAGCAGTTTCAAT 144 27 2506 Antisense
GTTACCAACTGTTCATTGTGAGCTT 260 447 2571 Antisense
GTATCCCATACCTCAATCTTTAATA 102 455 2617 Antisense
AATAGTCATCAGTCACTGGTCCCGC 291 173 2638 Antisense
CGCACCAATTTTTTCGATTCGCATA 476 253 2660 Antisense
TATGTCATATATTGCACCGTGGCCC 707 655 2683 Antisense
Sequence Source GenBank