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[173438_at]

Description g10444373-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g10444373 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /GEN=cab-1 /DEF=CAB-1
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 04      6grp_total > 24      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5178
1 2 3 4 range
A 7696.2
(3)
P 		2518.4
(-3)
P 		2994.7
(-2.4)
P 		6154
(1.2)
P 		5178
B 6979.6
(3)
P 		4332.5
(-0.9)
P 		2899.7
(-3)
P 		7003.6
(3)
P 		4104
C 7692
(3)
P 		4233.1
(-1.9)
P 		3435.7
(-3)
P 		5679
(0.2)
P 		4256
avr 7455.9
(3) 		3694.7
(-2.2) 		3110
(-3) 		6278.9
(1.4) 		4346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2212
1 2 3 4 5 6 range
A 5591.4
(3)
P 		5468.6
(2.7)
P 		4350.6
(-0.4)
P 		3408.7
(-3)
P 		3798.2
(-1.9)
P 		3639.6
(-2.4)
P 		2183
B 5576.7
(3)
P 		4826.3
(1)
P 		4961.2
(1.3)
P 		4410.8
(-0.2)
P 		3379.7
(-3)
P 		3516.2
(-2.6)
P 		2197
C 5560.6
(3)
P 		4655.7
(0.2)
P 		4700.1
(0.3)
P 		3771.9
(-2.6)
P 		3633.3
(-3)
P 		3686.9
(-2.8)
P 		1927
avr 5576.2
(3) 		4983.5
(1.2) 		4670.6
(0.2) 		3863.8
(-2.2) 		3603.7
(-3) 		3614.2
(-3) 		1973
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2256
1 2 3 4 range
A 2802.2
(3)
P 		546.7
(-3)
P 		782.9
(-2.4)
P 		900.8
(-2.1)
P 		2256
B 2225.7
(3)
P 		1070
(-1.5)
P 		671.9
(-3)
P 		1492.5
(0.2)
P 		1554
C 2546.3
(3)
P 		1217
(-2)
P 		1197.5
(-2.1)
P 		957.6
(-3)
P 		1589
avr 2524.7
(3) 		944.6
(-2.8) 		884.1
(-3) 		1117
(-2.1) 		1641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1303
1 2 3 4 5 6 range
A 1030.7
(-2.1)
P 		1944.9
(3)
P 		947.5
(-2.5)
P 		864.5
(-3)
P 		1146.1
(-1.4)
P 		886.1
(-2.9)
P 		1080
B 1940.4
(3)
P 		1606.5
(0.4)
P 		1204.7
(-2.7)
P 		1168.3
(-3)
P 		1373.1
(-1.4)
P 		1311.2
(-1.9)
P 		772
C 2061.1
(3)
P 		1420.6
(0)
P 		1196.2
(-1)
P 		758.5
(-3)
P 		1175.7
(-1.1)
P 		1234.2
(-0.8)
P 		1303
avr 1677.4
(3) 		1657.3
(2.8) 		1116.1
(-1.5) 		930.4
(-3) 		1231.6
(-0.6) 		1143.8
(-1.3) 		747
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25819
Sequence Type Exemplar sequence
Representative Public ID 10444373 NCBI
Target Description g10444373-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g10444373 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /GEN=cab-1 /DEF=CAB-1
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077635 NCBI Caenorhabditis elegans C-terminus-of-AEX-Binding protein family member (cab-1) (cab-1) mRNA, complete cds. 11/11 A 
C23H4.1.3 ENSEMBL cdna:known chromosome:CEL140:X:12199485:12212822:-1 gene:C23H4.1 11/11 A 
C23H4.1.2 ENSEMBL cdna:known chromosome:CEL140:X:12199485:12212970:-1 gene:C23H4.1 11/11 A 
C23H4.1.1 ENSEMBL cdna:known chromosome:CEL140:X:12199485:12205555:-1 gene:C23H4.1 11/11 A 
C23H4.1.4 ENSEMBL cdna:known chromosome:CEL140:X:12199600:12212858:-1 gene:C23H4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12199576-12205556(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cab-1
Ensembl C23H4.1
Entrez Gene 181382 Entrez gene
SwissProt Q93249 EMBL-EBI
WormBase CE17435 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5623 cell inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01682 Hypothetical protein C23H4.1 [Caenorhabditis elegans] ref|NP_510036.1| C-terminus-of-AEX-Binding protein family member (cab-1) [Caenorhabditis elegans] gb|AAG17881.1| CAB-1 [Caenorhabditis elegans] sp|Q93249|CAB1_CAEEL Protein cab-1 0.0
blast CAE69876 Hypothetical protein CBG16213 [Caenorhabditis briggsae] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR009635 EMBL-EBI Neural proliferation differentiation control-1 1.4E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510036.1 1 300-322
C23H4.1.3 1 300-322
C23H4.1.2 1 300-322
C23H4.1.1 1 300-322
C23H4.1.4 1 300-322
Sequence
Target Sequence 
>C. ELEGANS:173438_AT
agtcttttcgacaacaaccatcattttcatcatctttttcattcattttttcaaagccac
aacaaaaaaaatacttaaaaacccccttcagccttaacacctgaagggttggaaaaccaa
gacaactttcttaaattcctgtttgtaaaaactaagcgtactgcttagttctcttttctg
tcttaaaattgcttcccctttccgttgttgaatcgttcccccctataaccaacaatttcg
tagtttgtgcataacaccggtgaaaagagagagtaccatctaacacatttccacattttt
ctaatcgtttattgtaaactttttcttctccgaatcagaattcctaatttcatttttgtg
agataaaaaaaagagatccgtttgtcaaccaccccattcatcatcatttaccatcgatga
gttcgttcgcacacctcgacccaccgagtccactataaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCTTTTCGACAACAACCATCATT 215 61 1457 Antisense
AACCATCATTTTCATCATCTTTTTC 637 147 1472 Antisense
CCCCCTTCAGCCTTAACACCTGAAG 554 235 1538 Antisense
GACAACTTTCTTAAATTCCTGTTTG 534 365 1577 Antisense
AAGCGTACTGCTTAGTTCTCTTTTC 682 149 1610 Antisense
TTTCTGTCTTAAAATTGCTTCCCCT 528 671 1631 Antisense
AGAGTACCATCTAACACATTTCCAC 281 69 1726 Antisense
TAAACTTTTTCTTCTCCGAATCAGA 544 639 1771 Antisense
CCCATTCATCATCATTTACCATCGA 466 259 1849 Antisense
CATCGATGAGTTCGTTCGCACACCT 158 213 1868 Antisense
GACCCACCGAGTCCACTATAAATTT 93 381 1894 Antisense
Sequence Source GenBank