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[173435_s_at]

Description g156425-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g156423 /5_PRIME_EXT_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster /GEN=rac1 /DEF=rac1 protein
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 50      6grp_total > 04      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 464.6
(1.5)
P 		422.1
(0.7)
P 		541
(3)
P 		231
(-3)
P 		310
B 426.6
(2.5)
P 		406.6
(1.9)
P 		442.3
(3)
P 		255.5
(-3)
P 		187
C 386.7
(1.8)
P 		373.8
(1.3)
P 		424
(3)
P 		243.7
(-3)
P 		180
avr 426
(1.9) 		400.8
(1.2) 		469.1
(3) 		243.4
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 674.4
(3)
P 		438.9
(-0.5)
P 		346.6
(-1.9)
P 		435.9
(-0.5)
P 		471
(-0)
P 		269.6
(-3)
P 		405
B 642.7
(3)
P 		590.7
(2.1)
P 		292.6
(-3)
P 		464.4
(-0.1)
P 		352.2
(-2)
P 		358.1
(-1.9)
P 		350
C 637.2
(3)
P 		565.1
(1.5)
P 		459.8
(-0.6)
P 		560.7
(1.5)
P 		454.6
(-0.7)
P 		340.3
(-3)
P 		297
avr 651.4
(3) 		531.6
(0.8) 		366.3
(-2.2) 		487
(-0) 		425.9
(-1.1) 		322.7
(-3) 		329
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 169.1
(3)
P 		91.6
(-0.4)
P 		141.4
(1.8)
P 		33.8
(-3)
P 		135
B 136
(3)
P 		100.4
(0.4)
P 		102.5
(0.5)
P 		54.4
(-3)
P 		82
C 128
(1.9)
P 		107.5
(0.7)
P 		147.8
(3)
P 		41.1
(-3)
P 		107
avr 144.4
(3) 		99.8
(0.4) 		130.6
(2.2) 		43.1
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 124.3
(0.9)
P 		156.1
(3)
P 		75.5
(-2.3)
P 		110.6
(-0)
P 		142.1
(2.1)
P 		65.6
(-3)
P 		91
B 223.6
(3)
P 		196.6
(1.9)
P 		71
(-3)
P 		123
(-1)
P 		143.1
(-0.2)
P 		133.5
(-0.5)
P 		153
C 236.2
(3)
P 		172.4
(-0.1)
P 		117
(-2.8)
P 		112.8
(-3)
P 		147.1
(-1.3)
P 		113.9
(-2.9)
P 		123
avr 194.7
(3) 		175
(1.9) 		87.8
(-3) 		115.5
(-1.4) 		144.1
(0.2) 		104.3
(-2.1) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173435_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24954
Sequence Type Exemplar sequence
Representative Public ID 156425 NCBI
Target Description g156425-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g156423 /5_PRIME_EXT_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster /GEN=rac1 /DEF=rac1 protein
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067961, NM_067962
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C09G12.8b ENSEMBL cdna:known chromosome:CEL140:IV:3506397:3509524:-1 gene:C09G12.8 11/11 A 
C09G12.8a ENSEMBL cdna:known chromosome:CEL140:IV:3506397:3509504:-1 gene:C09G12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3506406-3509523(-) 100.0 100.0
Public Domain and Genome References
Ensembl C09G12.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25821 Cell death abnormality protein 10, isoform b [Caenorhabditis elegans] ref|NP_500363.1| CEll Death abnormality family member (ced-10) [Caenorhabditis elegans] gb|AAF33846.1| cell-corpse engulfment protein CED-10 [Caenorhabditis elegans] sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse engulfment protein ced-10) (CErac1) 1.0E-108
blast CAA48506 small ras-related protein [Caenorhabditis elegans] gb|AAA28141.1| rac1 protein gb|AAA28140.1| rac1 protein 1.0E-107
blast CAB05247 Hypothetical protein K03D3.10a [Caenorhabditis elegans] ref|NP_502936.1| RAC related family member (rac-2) [Caenorhabditis elegans] sp|Q94124|RAC2_CAEEL RAS-related protein rac-2 gb|AAB40386.1| CeRac2 9.0E-97
blast AAC25820 Cell death abnormality protein 10, isoform a [Caenorhabditis elegans] ref|NP_500362.3| CEll Death abnormality family member (ced-10) [Caenorhabditis elegans] 2.0E-69
blast CAE69029 Hypothetical protein CBG15031 [Caenorhabditis briggsae] 3.0E-68
blast XP_640169 Rho GTPase [Dictyostelium discoideum] gb|AAG45114.1| Rac1C [Dictyostelium discoideum] sp|P34146|RAC1C_DICDI RAS-related protein rac1C gb|AAD37805.1| Rac1C [Dictyostelium discoideum] gb|EAL66042.1| Rho GTPase [Dictyostelium discoideum] 4.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 8.8E-90
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 6.4E-39
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:173435_S_AT
gatttttcatcttaaactcgctgtgatacttttcttacttatccaccccaattttcagca
tattttgtgctcatttttgagccgaaaaatgctcaatttgtccattcataattttgtgct
tttccccttttcccacctgaaataggtcttttttcatctgaaaaattgaataacttttcc
ccaaaaaccacaagtgctttttcctctctaatttttatcggtttattttttttatttgaa
atttcttcgaaatttttgtgaaatttcttcgaaaaatctgaaaatgtttggaaatctcta
cgattttttctaaaaaatgttcaaactttttggaatttgtttgaaaaattatttggaatt
tttctgaaactttttttcaaaaactttcgatttttttttgtaatttttaggacacaacga
accctctctccacaaccaaaaatcctcttttttctattgtgaatttgaacaacaaactcg
gctctttttcccttttttcttactttaattgttaatttctcttctttttgtccaactttt
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTTCATCTTAAACTCGCTGTG 506 429 1017 Antisense
AACTCGCTGTGATACTTTTCTTACT 527 141 1031 Antisense
TGATACTTTTCTTACTTATCCACCC 307 565 1040 Antisense
TCCACCCCAATTTTCAGCATATTTT 581 589 1058 Antisense
ATTCATAATTTTGTGCTTTTCCCCT 595 11 1120 Antisense
GAAATAGGTCTTTTTTCATCTGAAA 339 361 1155 Antisense
TGCTTTTTCCTCTCTAATTTTTATC 504 577 1211 Antisense
TTTTAGGACACAACGAACCCTCTCT 560 671 1421 Antisense
AATCCTCTTTTTTCTATTGTGAATT 34 169 1457 Antisense
TGAACAACAAACTCGGCTCTTTTTC 422 561 1482 Antisense
TCTCTTCTTTTTGTCCAACTTTTAT 476 611 1534 Antisense
Sequence Source GenBank