[Home] | [Total List]

[173434_at]

Description g1399720-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g1399720 /5_PRIME_EXT_DB=GenBank Identifier /CHR=2 /FEA=Genomic Cluster /GEN=ras1 /DEF=R-ras1 homolog
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 30      6grp_total > 18      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 798
1 2 3 4 range
A 1498
(3)
P 		1129.9
(0.2)
P 		700.4
(-3)
P 		998.6
(-0.8)
P 		798
B 1342.4
(3)
P 		1000.1
(-0.9)
P 		817
(-3)
P 		1087.9
(0.1)
P 		525
C 1413
(3)
P 		1067.2
(-0.8)
P 		867.3
(-3)
P 		1011.1
(-1.4)
P 		546
avr 1417.8
(3) 		1065.7
(-0.4) 		794.9
(-3) 		1032.5
(-0.7) 		623

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 1068.2
(3)
P 		860.8
(0.4)
P 		706.4
(-1.5)
P 		586.8
(-3)
P 		782
(-0.6)
P 		628.7
(-2.5)
P 		481
B 1207.9
(3)
P 		766.1
(-1.2)
P 		570.6
(-3)
P 		751.8
(-1.3)
P 		699.4
(-1.8)
P 		609.2
(-2.6)
P 		637
C 1057.5
(3)
P 		679.8
(-1.7)
P 		908.9
(1.1)
P 		576.7
(-3)
P 		725.6
(-1.1)
P 		704.2
(-1.4)
P 		481
avr 1111.2
(3) 		768.9
(-1.3) 		728.6
(-1.9) 		638.4
(-3) 		735.7
(-1.8) 		647.4
(-2.9) 		473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 545.4
(3)
P 		245.3
(-1.5)
P 		183.1
(-2.4)
P 		146.2
(-3)
P 		399
B 428.1
(3)
P 		247
(-1.6)
P 		189.3
(-3)
P 		231.8
(-1.9)
P 		239
C 467.7
(3)
P 		306.8
(-0.2)
P 		302.3
(-0.3)
P 		170.5
(-3)
P 		297
avr 480.4
(3) 		266.4
(-1.3) 		224.9
(-2.2) 		182.8
(-3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 196.9
(-1.2)
P 		306.1
(3)
P 		153.8
(-2.8)
P 		148.8
(-3)
P 		236
(0.3)
P 		153.1
(-2.8)
P 		157
B 420.3
(3)
P 		255
(-0.5)
P 		138.6
(-3)
P 		199.1
(-1.7)
P 		284.2
(0.1)
P 		227.2
(-1.1)
P 		282
C 392
(3)
P 		207.4
(-1)
P 		231.3
(-0.5)
P 		116
(-3)
P 		234.8
(-0.4)
P 		235.7
(-0.4)
P 		276
avr 336.4
(3) 		256.2
(0.4) 		174.6
(-2.3) 		154.6
(-3) 		251.7
(0.2) 		205.3
(-1.3) 		182
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23471
Sequence Type Exemplar sequence
Representative Public ID 1399720 NCBI
Target Description g1399720-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g1399720 /5_PRIME_EXT_DB=GenBank Identifier /CHR=2 /FEA=Genomic Cluster /GEN=ras1 /DEF=R-ras1 homolog
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064222, NM_001026858
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026858 NCBI Caenorhabditis elegans R-RAS related family member (ras-1) (ras-1) mRNA, complete cds. None
SNAP00000019445 ENSEMBL cdna:SNAP chromosome:CEL140:II:12349248:12349577:-1 None
GENEFINDER00000019446 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12345613:12352126:-1 None
C44C11.1a ENSEMBL cdna:known chromosome:CEL140:II:12345613:12352053:-1 gene:C44C11.1 A 
NM_064222 NCBI Caenorhabditis elegans R-RAS related family member (ras-1) (ras-1) mRNA, complete cds. A 
C44C11.1b.1 ENSEMBL cdna:known chromosome:CEL140:II:12347087:12352126:-1 gene:C44C11.1 None
C44C11.1b.2 ENSEMBL cdna:known chromosome:CEL140:II:12347087:12352127:-1 gene:C44C11.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12345186-12352119(-) 100.0 100.0
Public Domain and Genome References
Ensembl C44C11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK72295 R-ras related protein 1, isoform a [Caenorhabditis elegans] ref|NP_496623.1| R-RAS related family member (ras-1) [Caenorhabditis elegans] gb|AAB66712.1| GTP binding protein [Caenorhabditis elegans] gb|AAB03320.1| R-ras1 homolog 1.0E-108
blast CAE73486 Hypothetical protein CBG20938 [Caenorhabditis briggsae] 1.0E-104
blast T32953 hypothetical protein C44C11.1 - Caenorhabditis elegans 4.0E-91
blast T32953 hypothetical protein C44C11.1 - Caenorhabditis elegans 6.0E-91
blast AAN63433 R-ras related protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022029.1| R-RAS related family member (ras-1) [Caenorhabditis elegans] 6.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 6.1E-88
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 5.5E-68
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 5.3E-30
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 6.1E-88
Sequence
Target Sequence 
>C. ELEGANS:173434_AT
gcaggattcaataaactccagaaactcaattaatctattccagtccgatacgacattcaa
cattggaagatacttcaaaaaccttcaaaaaatgtgaatagtcgaaccggagagtcaatc
cttcatgactttcatacgatatactgcaccctcttctgaaaatttttaacttgctgcctt
taaactccttctctccacttcaaaacgggatttctttggttttctattgcttttaaaatg
tttttttttcctctgattctagccccttcttgtacagttccaacaaaatatttattccat
atcctaccaccctacccgttgtgcccgttatcccgagtacaaatctctctcaaatttcga
ccaaaaatctgatatgcgctctactgatagccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGATTCAATAAACTCCAGAAAC 15 311 707 Antisense
AACTCAATTAATCTATTCCAGTCCG 356 139 729 Antisense
ATTCCAGTCCGATACGACATTCAAC 687 5 743 Antisense
TTAACTTGCTGCCTTTAAACTCCTT 308 683 872 Antisense
TTCTCTCCACTTCAAAACGGGATTT 587 687 895 Antisense
GGGATTTCTTTGGTTTTCTATTGCT 405 495 913 Antisense
AATATTTATTCCATATCCTACCACC 472 173 993 Antisense
CGAGTACAAATCTCTCTCAAATTTC 186 249 1040 Antisense
AATCTCTCTCAAATTTCGACCAAAA 567 169 1048 Antisense
CAAAAATCTGATATGCGCTCTACTG 16 191 1068 Antisense
TGATATGCGCTCTACTGATAGCCCT 171 565 1076 Antisense
Sequence Source GenBank