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[173433_s_at]

Description g2266991-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g2266991 /5_PRIME_EXT_DB=GenBank Identifier /CHR=3 /FEA=Genomic Cluster /DEF=O-linked GlcNAc transferase
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 01      6grp_total > 37      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4000
1 2 3 4 range
A 2167.7
(1.7)
P 		936.5
(-3)
P 		1457.1
(-1)
P 		2522.8
(3)
P 		1586
B 1498.7
(-2.3)
P 		1645.8
(-2)
P 		1007.9
(-3)
P 		4936
(3)
P 		3928
C 2056.7
(1.4)
P 		1170.5
(-3)
P 		2388.8
(3)
P 		2336.9
(2.7)
P 		1218
avr 1907.7
(-1) 		1250.9
(-3) 		1617.9
(-1.9) 		3265.2
(3) 		2014

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2628
1 2 3 4 5 6 range
A 1974.9
(2.8)
P 		2012
(3)
P 		985.8
(-3)
P 		1302
(-1.2)
P 		1879.3
(2.2)
P 		1687.7
(1.1)
P 		1026
B 3613.9
(3)
P 		2632.4
(0.6)
P 		1204.6
(-3)
P 		2296.1
(-0.3)
P 		1500.1
(-2.3)
P 		2194.1
(-0.5)
P 		2409
C 2804.4
(3)
P 		2711.7
(2.5)
P 		1682.7
(-3)
P 		2281.8
(0.2)
P 		1864.8
(-2)
P 		2647.7
(2.2)
P 		1122
avr 2797.7
(3) 		2452
(1.6) 		1291
(-3) 		1960
(-0.3) 		1748.1
(-1.2) 		2176.5
(0.5) 		1507
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 849
1 2 3 4 range
A 789.2
(3)
P 		203.3
(-3)
P 		380.9
(-1.2)
P 		369.3
(-1.3)
P 		586
B 477.9
(-1.2)
P 		406.5
(-1.7)
P 		233.6
(-3)
P 		1051.9
(3)
P 		818
C 680.8
(1.2)
P 		336.5
(-3)
P 		832.6
(3)
P 		394
(-2.3)
P 		496
avr 649.3
(3) 		315.4
(-3) 		482.4
(0) 		605.1
(2.2) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1043
1 2 3 4 5 6 range
A 364.1
(-1.2)
P 		715.6
(3)
P 		214.7
(-3)
P 		330.2
(-1.6)
P 		567.1
(1.2)
P 		410.9
(-0.6)
P 		501
B 1257.5
(3)
P 		876.2
(0.6)
P 		292.5
(-3)
P 		608.2
(-1)
P 		609.5
(-1)
P 		818.2
(0.3)
P 		965
C 1039.5
(3)
P 		827.4
(0.9)
P 		428.3
(-3)
P 		458.9
(-2.7)
P 		603.4
(-1.3)
P 		886.3
(1.5)
P 		611
avr 887
(3) 		806.4
(2.2) 		311.8
(-3) 		465.8
(-1.4) 		593.3
(-0.1) 		705.1
(1.1) 		575
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173433_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24193
Sequence Type Exemplar sequence
Representative Public ID 2266991 NCBI
Target Description g2266991-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g2266991 /5_PRIME_EXT_DB=GenBank Identifier /CHR=3 /FEA=Genomic Cluster /DEF=O-linked GlcNAc transferase
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066162 NCBI Caenorhabditis elegans O-Linked GlcNAc Transferase family member (ogt-1) (ogt-1) mRNA, complete cds. 11/11 A 
K04G7.3 ENSEMBL cdna:known chromosome:CEL140:III:7145551:7153694:-1 gene:K04G7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7145747-7153693(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ogt-1
Ensembl K04G7.3
Entrez Gene 176000 Entrez gene
SwissProt O18158 EMBL-EBI
WormBase CE25042 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258575_AT O-linked N-acetyl glucosamine transferase, putative at
CANINE:1589080_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE:1588894_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE:1587597_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE:1586154_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE_2:CFA.15244.1.S1_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE_2:CFA.1825.1.A1_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE_2:CFA.18574.1.S1_S_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE_2:CFA.20843.1.S1_S_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE_2:CFA.874.2.S1_S_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE_2:CFAAFFX.26228.1.S1_S_AT similar to O-linked GlcNAc transferase isoform 1 cfa
CANINE_2:CFAAFFX.26232.1.S1_S_AT similar to O-linked GlcNAc transferase isoform 1 cfa
DROSOPHILA_2:1626219_S_AT O-glycosyltransferase dm
DROSGENOME1:153888_AT O-glycosyltransferase dm
CHICKEN:GGA.4475.1.S1_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) gga
CHICKEN:GGAAFFX.12237.1.S1_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) gga
CHICKEN:GGAAFFX.26501.1.S1_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) gga
HG-U95AV2:38614_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133_PLUS_2:207563_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A:207563_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-FOCUS:207563_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A_2:207563_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133_PLUS_2:220594_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A:220594_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A_2:220594_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133_PLUS_2:207564_X_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A:207564_X_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A_2:207564_X_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HU35KSUBC:RC_AA404560_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HU35KSUBD:RC_R76782_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HU35KSUBD:RC_N90066_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HUGENEFL:U77413_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
U133_X3P:G2266993_3P_A_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
U133_X3P:G13376783_3P_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
U133_X3P:HS.100293.2.S1_3P_A_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
U133_X3P:HS.100293.1.A2_3P_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A_2:209240_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133_PLUS_2:209240_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A:209240_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A_2:212307_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133_PLUS_2:212307_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133A:212307_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U95AV2:39507_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U95D:79064_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133_PLUS_2:229787_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
HG-U133B:229787_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
U133_X3P:HS.100293.3.S1_3P_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) hs
MG-U74AV2:94818_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MG-U74BV2:116830_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOE430A:1425516_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430A_2:1425516_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430_2:1425516_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOE430A:1451738_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430A_2:1451738_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430_2:1451738_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOE430A:1436780_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430A_2:1436780_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430_2:1436780_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOE430A:1425517_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430A_2:1425517_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430_2:1425517_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOE430A:1460631_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430A_2:1460631_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MOUSE430_2:1460631_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) mm
MG-U74BV2:164385_R_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (Ogt), mRNA mm
MU19KSUBA:TC17464_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (Ogt), mRNA mm
MU19KSUBA:TC24700_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (Ogt), mRNA mm
MU19KSUBB:TC28666_S_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (Ogt), mRNA mm
MU19KSUBB:TC28861_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (Ogt), mRNA mm
RG-U34A:U76557_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
RAE230A:1370543_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
RAT230_2:1370543_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
RAE230B:1384859_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
RAT230_2:1384859_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
RAE230A:1388758_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
RAT230_2:1388758_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
RG-U34B:RC_AI045935_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
RG-U34C:RC_AI176853_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
RG-U34C:RC_AI235234_AT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) rn
Protein Similarities
Method ID Description E-Value
blast AAA62535 O-linked glcnac transferase protein 1 [Caenorhabditis elegans] ref|NP_498563.1| O-Linked GlcNAc Transferase family member (ogt-1) [Caenorhabditis elegans] sp|O18158|OGT_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase (O-GlcNAc) (OGT) 0.0
blast AAB63465 O-linked GlcNAc transferase [Caenorhabditis elegans] 0.0
blast E88499 protein K04G7.3 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 0.33
Pfam IPR001440 EMBL-EBI TPR repeat 1.2E-9
Pfam IPR001440 EMBL-EBI TPR repeat 9.6E-8
Pfam IPR001440 EMBL-EBI TPR repeat 1.1E-6
Pfam IPR001440 EMBL-EBI TPR repeat 6.5E-10
Pfam IPR001440 EMBL-EBI TPR repeat 5.6E-5
Pfam IPR001440 EMBL-EBI TPR repeat 3.8E-9
Pfam IPR001440 EMBL-EBI TPR repeat 7.5E-9
Pfam IPR001440 EMBL-EBI TPR repeat 8.2E-8
Pfam IPR001440 EMBL-EBI TPR repeat 1.0E-9
Pfam IPR001440 EMBL-EBI TPR repeat 2.1E-11
Pfam IPR001440 EMBL-EBI TPR repeat 2.5E-9
Sequence
Target Sequence 
>C. ELEGANS:173433_S_AT
aatgcatttcatttctcttcaagattttccatattggaaaccaaatgatttttttgctca
tttctttctttctttgcgtattactcctcagtgctctttctacaatatctcgctccaaat
ccccttctccaccgttcctcataatctccattgggtaaattctttgtgatttcattttgt
acgaagaattttcaattttcccatccatcgtcctatagacgttcttatcaaagacataag
atccgtggttcttgttttgtggatctcttcatcactctaatcactcttaagaattttatt
cctccctccgtagtttttcttttctaatttatttttgttctataaactgaagaaagaaaa
acgtgccattcattttcctttctcgtgtttaatttttagtagaattttaagttttaagat
cccctttgttaaaccatattggtttccctttcccgtttactctttagttttcttgaaata
ttcggttttgtatgcaacttgatcacttactcaattccttctttttcttgattttgcttt
cccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCATTTCATTTCTCTTCAAGAT 697 165 3529 Antisense
TCTTTCTTTCTTTGCGTATTACTCC 467 615 3591 Antisense
GTGCTCTTTCTACAATATCTCGCTC 672 479 3619 Antisense
GTTCCTCATAATCTCCATTGGGTAA 291 441 3662 Antisense
TTCCCATCCATCGTCCTATAGACGT 34 697 3726 Antisense
GACATAAGATCCGTGGTTCTTGTTT 694 369 3761 Antisense
GTTCTTGTTTTGTGGATCTCTTCAT 215 443 3776 Antisense
TAAGATCCCCTTTGTTAAACCATAT 293 637 3943 Antisense
GGTTTTGTATGCAACTTGATCACTT 695 505 4012 Antisense
TGATCACTTACTCAATTCCTTCTTT 25 565 4028 Antisense
TCTTTTTCTTGATTTTGCTTTCCCG 48 617 4048 Antisense
Sequence Source GenBank