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[173428_at]

Description g5732889-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g5732889 /5_PRIME_EXT_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster /GEN=lin-59 /DEF=trithorax-related protein LIN-59
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 20      6grp_total > 18      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 975
1 2 3 4 range
A 1471.9
(3)
P 		909.8
(-0.7)
P 		567.7
(-3)
P 		786.4
(-1.5)
P 		904
B 957.1
(2.7)
P 		678.8
(-0.8)
P 		498.6
(-3)
P 		984.4
(3)
P 		486
C 1473.4
(3)
P 		870.6
(-1.6)
P 		682.4
(-3)
P 		804.4
(-2.1)
P 		791
avr 1300.8
(3) 		819.7
(-1) 		582.9
(-3) 		858.4
(-0.7) 		718

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1704
1 2 3 4 5 6 range
A 2238.1
(3)
P 		1188.3
(-1.1)
P 		729.5
(-2.8)
P 		687.6
(-3)
P 		895.3
(-2.2)
P 		983.2
(-1.9)
P 		1551
B 1458.1
(3)
P 		708.8
(-2.8)
P 		761.8
(-2.4)
P 		828.7
(-1.9)
P 		681.4
(-3)
P 		857.9
(-1.6)
P 		777
C 1654.8
(3)
P 		1201.4
(0.6)
P 		973.1
(-0.6)
P 		716.7
(-2)
P 		879.4
(-1.2)
P 		533.8
(-3)
P 		1121
avr 1783.7
(3) 		1032.8
(-1.3) 		821.5
(-2.6) 		744.3
(-3) 		818.7
(-2.6) 		791.6
(-2.7) 		1039
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 535.9
(3)
P 		197.5
(-1.8)
P 		148.4
(-2.5)
P 		115.1
(-3)
P 		421
B 305.2
(3)
P 		167.7
(-1.3)
P 		115.5
(-3)
P 		209.8
(-0)
P 		190
C 487.7
(3)
P 		250.3
(-1)
P 		237.8
(-1.3)
P 		135.6
(-3)
P 		352
avr 442.9
(3) 		205.2
(-1.9) 		167.2
(-2.7) 		153.5
(-3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 469
1 2 3 4 5 6 range
A 412.6
(2.8)
P 		422.6
(3)
P 		158.9
(-3)
P 		174.4
(-2.6)
P 		270.2
(-0.5)
P 		239.4
(-1.2)
P 		264
B 507.4
(3)
P 		235.9
(-2.1)
P 		185
(-3)
P 		219.5
(-2.4)
P 		276.8
(-1.3)
P 		319.9
(-0.5)
P 		322
C 613.3
(3)
P 		366.6
(-0.2)
P 		247.7
(-1.7)
P 		144.1
(-3)
P 		284.6
(-1.2)
P 		178.7
(-2.6)
P 		469
avr 511.1
(3) 		341.7
(-0.1) 		197.2
(-2.7) 		179.3
(-3) 		277.2
(-1.2) 		246
(-1.8) 		332
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22493
Sequence Type Exemplar sequence
Representative Public ID 5732889 NCBI
Target Description g5732889-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g5732889 /5_PRIME_EXT_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster /GEN=lin-59 /DEF=trithorax-related protein LIN-59
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058805 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-59) (lin-59) mRNA, complete cds. 11/11 A 
T12F5.4 ENSEMBL cdna:known chromosome:CEL140:I:3713125:3721159:-1 gene:T12F5.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3713125-3721162(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lin-59
Ensembl T12F5.4
Entrez Gene 266825 Entrez gene
SwissProt O44757 EMBL-EBI
WormBase CE13601 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB96746 Abnormal cell lineage protein 59 [Caenorhabditis elegans] ref|NP_491206.1| abnormal cell LINeage family member (lin-59) [Caenorhabditis elegans] gb|AAD49324.1| trithorax-related protein LIN-59 [Caenorhabditis elegans] sp|O44757|LIN59_CAEEL Protein lin-59 (Abnormal cell lineage protein 59) 0.0
blast CAE66678 Hypothetical protein CBG12017 [Caenorhabditis briggsae] 0.0
blast CAG10822 unnamed protein product [Tetraodon nigroviridis] 7.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.1E-16
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.4E-31
Pfam IPR001025 EMBL-EBI Bromo adjacent region 1.8E-36
Sequence
Target Sequence 
>C. ELEGANS:173428_AT
tacaacacactagtacgtgcctcacccacattccatcagtttttgtttcgttttatgtga
tataatctctcactctctctctcgttttttccatcaagcaaaccttgatccttctgttag
aaaaatgtagctataaaatacaattctttttgatacaaacaagcattctactcactatca
agtgccactttatttgcctgtctctaatctttatccacccccccccccccccattccgtc
attggcaacaaaattgtgaagtcctctcggaccggtgcccaccaactccttacgtagaag
aatctgcggattcaagattctcaccctcaagtagatcattatatacggttatcccctctc
tctctctctcactctcttttgattcttaaaattccacaaacacacacctcctcgcctcct
tccaaaatttgcttttttgttcccatcatctcattaatcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAACACACTAGTACGTGCCTCAC 39 643 4140 Antisense
TCACCCACATTCCATCAGTTTTTGT 338 627 4161 Antisense
TCTCTCGTTTTTTCCATCAAGCAAA 686 611 4217 Antisense
AAGCAAACCTTGATCCTTCTGTTAG 355 151 4235 Antisense
AACAAGCATTCTACTCACTATCAAG 181 133 4297 Antisense
TCAAGTGCCACTTTATTTGCCTGTC 25 633 4317 Antisense
TATTTGCCTGTCTCTAATCTTTATC 107 663 4330 Antisense
AGATTCTCACCCTCAAGTAGATCAT 459 65 4454 Antisense
TCTCTCACTCTCTTTTGATTCTTAA 70 613 4504 Antisense
TCGCCTCCTTCCAAAATTTGCTTTT 183 599 4551 Antisense
TGTTCCCATCATCTCATTAATCTTG 168 563 4577 Antisense
Sequence Source GenBank