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[173422_at]

Description g4262361-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g4262361 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /GEN=mig-15 /DEF=alternatively spliced serine-threonine proteinkinase MIG-15
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 16      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 30      6grp_total > 06      4grp_total > 45      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1069
1 2 3 4 range
A 1290.6
(3)
P 		1032.4
(1)
P 		695.3
(-1.6)
P 		520.1
(-3)
P 		771
B 1589.4
(3)
P 		1090
(-0.4)
P 		726.2
(-2.8)
P 		699.3
(-3)
P 		890
C 1272.9
(3)
P 		951.4
(0.4)
P 		845.6
(-0.5)
P 		535.5
(-3)
P 		737
avr 1384.3
(3) 		1024.6
(0.3) 		755.7
(-1.7) 		585
(-3) 		799

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1181
1 2 3 4 5 6 range
A 1070.1
(2.8)
P 		1083.3
(3)
P 		658.2
(-2.3)
P 		745.5
(-1.2)
P 		700.7
(-1.7)
P 		597.7
(-3)
P 		486
B 1665.6
(3)
P 		1020.1
(-0.5)
P 		548.9
(-3)
P 		747
(-1.9)
P 		553.7
(-3)
P 		544.6
(-3)
P 		1121
C 1147.3
(3)
P 		864.7
(0.4)
P 		844.9
(0.3)
P 		672.6
(-1.3)
P 		655.3
(-1.5)
P 		485
(-3)
P 		662
avr 1294.3
(3) 		989.4
(0.6) 		684
(-1.9) 		721.7
(-1.6) 		636.6
(-2.2) 		542.4
(-3) 		752
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 469.9
(3)
P 		224.1
(-0.7)
P 		181.8
(-1.4)
P 		76.1
(-3)
P 		394
B 506.9
(3)
P 		269.2
(-1)
P 		168.3
(-2.7)
P 		149
(-3)
P 		358
C 421.4
(3)
P 		273.5
(0.3)
P 		294.7
(0.7)
P 		90.3
(-3)
P 		331
avr 466.1
(3) 		255.6
(-0.5) 		214.9
(-1.2) 		105.1
(-3) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 197.3
(-1.7)
P 		385.3
(3)
P 		143.3
(-3)
P 		189.1
(-1.9)
P 		211.4
(-1.3)
P 		145.5
(-2.9)
P 		242
B 579.5
(3)
P 		339.5
(-0.2)
P 		133.3
(-3)
P 		197.9
(-2.1)
P 		225
(-1.8)
P 		203.1
(-2.1)
P 		446
C 425.3
(3)
P 		263.8
(-0.3)
P 		215
(-1.4)
P 		135.3
(-3)
P 		212.1
(-1.4)
P 		162.4
(-2.4)
P 		290
avr 400.7
(3) 		329.5
(1.2) 		163.9
(-3) 		174.1
(-2.7) 		216.2
(-1.7) 		170.3
(-2.8) 		237
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173422_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25887
Sequence Type Exemplar sequence
Representative Public ID 4262361 NCBI
Target Description g4262361-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g4262361 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /GEN=mig-15 /DEF=alternatively spliced serine-threonine proteinkinase MIG-15
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029800(11), NM_001029802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029800 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-15) (mig-15) mRNA, complete cds. 11/11 None
NM_001029802 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-15) (mig-15) mRNA, complete cds. 11/11 None
ZC504.4a ENSEMBL cdna:known chromosome:CEL140:X:10421583:10428578:-1 gene:ZC504.4 11/11 A 
ZC504.4c ENSEMBL cdna:known chromosome:CEL140:X:10421583:10428502:-1 gene:ZC504.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181248 4 2 NM_001029800 173422_at (11)
NM_001029802 173422_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10421583-10428581(-) 98.51 100.0
Public Domain and Genome References
Ensembl ZC504.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63416 Hypothetical protein ZC504.4a [Caenorhabditis elegans] ref|NP_001024971.1| abnormal cell MIGration family member (mig-15) [Caenorhabditis elegans] gb|AAD14593.1| alternatively spliced serine/threonine protein kinase MIG-15 [Caenorhabditis elegans] 0.0
blast CAC42384 Hypothetical protein ZC504.4c [Caenorhabditis elegans] ref|NP_001024973.1| abnormal cell MIGration family member (mig-15) [Caenorhabditis elegans] sp|Q23356|MIG15_CAEEL Serine/threonine-protein kinase mig-15 (Abnormal cell migration protein 15) 0.0
blast CAB63417 Hypothetical protein ZC504.4b [Caenorhabditis elegans] ref|NP_001024972.1| abnormal cell MIGration family member (mig-15) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
hanks 2.1.19 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; PhKgM 3.0E-64
hanks 2.1.19 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; PhKgM 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.9E-79
Pfam IPR001180 EMBL-EBI Citron-like 3.6E-103
Pfam IPR001180 EMBL-EBI Citron-like 3.6E-103
Sequence
Target Sequence 
>C. ELEGANS:173422_AT
caaattggtaaactggtctcgaatcaatcgttttccattttttaaaatatgtatttgtaa
aataatcatttatcaaaaaaaattaataataattgttatggtcgtgtgattgttgtcgtc
atgagaaccatcattctctcccgtttccccgcttttagccaatttcaaagtcattttcta
accatgaaaccatctcgatactattccctcttccgcaactgtatttcaagcatccatcca
ggatttcaaataacctaatatgttaaaatctacactttcctcttcattttccccgtttca
aaatgtttatgaataaagataaaacaacaaaaatttgctcacaatgtgattaaatcgctt
tttaggcatttcatgtacatttccgtcacccttctccaaatcaaaagtgctcatactcgt
attatttgaatattatcctaatcatttttcaaattcctccgtccaattgcctaatcataa
ttttctttgttctagttctgatttatttttcctttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATTGGTAAACTGGTCTCGAATC 679 191 3345 Antisense
GTCTCGAATCAATCGTTTTCCATTT 62 471 3360 Antisense
GGTCGTGTGATTGTTGTCGTCATGA 262 503 3444 Antisense
CATGAGAACCATCATTCTCTCCCGT 287 211 3464 Antisense
TCCCCGCTTTTAGCCAATTTCAAAG 409 235 3490 Antisense
TGAAACCATCTCGATACTATTCCCT 284 573 3529 Antisense
CCTCTTCCGCAACTGTATTTCAAGC 589 267 3551 Antisense
TGTATTTCAAGCATCCATCCAGGAT 682 559 3564 Antisense
TAAAATCTACACTTTCCTCTTCATT 91 641 3608 Antisense
TAATTTTCTTTGTTCTAGTTCTGAT 51 635 3822 Antisense
TAGTTCTGATTTATTTTTCCTTTGA 488 653 3837 Antisense
Sequence Source GenBank