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[173420_s_at]

Description AV181201_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=g4579709 /5_PRIME_EXT_DB=GenBank Identifier /GB=AV181201 /CHR=4 /FEA=Genomic Cluster /PROTEIN_GB=BAA75066.1 /REVCOMP /DEF=Vha3 protein; Caenorhabditis elegans cDNA clone:yk617c8 : 3prime end, single read.
Cluster 6grp_total > 09      4grp_total > 55      6grp_cgc > 35      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.4
(-3)
A 		4.4
(-2.3)
A 		12.4
(3)
A 		9.6
(1.1)
A 		9
B 22.9
(3)
A 		6.6
(-1.9)
A 		4.1
(-2.7)
A 		3
(-3)
A 		20
C 20.1
(3)
A 		5.9
(-2.3)
A 		4.1
(-3)
A 		4.3
(-2.9)
A 		16
avr 15.5
(3) 		5.6
(-3) 		6.9
(-2.2) 		5.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3.8
(1.5)
A 		2
(-3)
A 		4.4
(3)
A 		2.9
(-0.8)
A 		3.1
(-0.3)
A 		2.5
(-1.8)
A 		2
B 5.1
(3)
A 		3.4
(-0.1)
A 		2
(-2.6)
A 		3.7
(0.5)
A 		1.8
(-3)
A 		4.4
(1.7)
A 		3
C 2.1
(-1.2)
A 		3.3
(2.4)
A 		3.1
(1.8)
A 		3.5
(3)
A 		1.5
(-3)
A 		2.3
(-0.6)
A 		2
avr 3.7
(3) 		2.9
(-0) 		3.2
(1.1) 		3.4
(1.9) 		2.1
(-3) 		3.1
(0.8) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.2
(-2.5)
A 		1
(-3)
A 		3.2
(3)
A 		1.4
(-1.9)
A 		2
B 7.3
(3)
A 		1.6
(-2.1)
A 		1
(-2.6)
A 		0.6
(-3)
A 		7
C 6.7
(3)
A 		1.7
(-2)
A 		1.4
(-2.3)
A 		0.7
(-3)
A 		6
avr 5.1
(3) 		1.4
(-2.3) 		1.9
(-1.6) 		0.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-1.5)
A 		0.7
(-1.5)
A 		1
(3)
A 		0.7
(-1.5)
A 		0.9
(1.5)
A 		0.6
(-3)
A 		0
B 1.8
(3)
A 		1.1
(-0.2)
A 		0.5
(-3)
A 		1
(-0.7)
A 		0.7
(-2.1)
A 		1.6
(2.1)
A 		1
C 0.8
(0.6)
A 		1
(3)
A 		0.8
(0.6)
A 		0.7
(-0.6)
A 		0.5
(-3)
A 		0.8
(0.6)
A 		1
avr 1.1
(3) 		0.9
(0) 		0.8
(-1.5) 		0.8
(-1.5) 		0.7
(-3) 		1
(1.5) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173420_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28258
Sequence Type Exemplar sequence
Representative Public ID AV181201 NCBI
Target Description AV181201_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=g4579709 /5_PRIME_EXT_DB=GenBank Identifier /GB=AV181201 /CHR=4 /FEA=Genomic Cluster /PROTEIN_GB=BAA75066.1 /REVCOMP /DEF=Vha3 protein; Caenorhabditis elegans cDNA clone:yk617c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV181201
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV181201 AV181201_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=g4579709 /5_PRIME_EXT_DB=GenBank Identifier /GB=AV181201 /CHR=4 /FEA=Genomic Cluster /PROTEIN_GB=BAA75066.1 /REVCOMP /DEF=Vha3 protein; Caenorhabditis elegans cDNA clone:yk617c8 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067787 11/11 Negative Strand Matching Probes A 
SNAP00000023928 10/11 Negative Strand Matching Probes None
GENEFINDER00000023937 11/11 Negative Strand Matching Probes None
Y38F2AL.4 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2314594-2315996(+) 67.05 100.0
Sequence
Target Sequence 
>C. ELEGANS:173420_S_AT
ggatgagggcgacgatcattccgtagagtcccaagacttcagagaagataaggataagga
tcattccgacgaaaagacgtggctgttgagctgttccacggactccggcgtctccaacaa
ttccgatagcatatccggctcccaatccacaaagtccgcacgtaagtccggcggccaagt
gagcgaatcccttattcaaatcgtaaccagcacttgccgacgtcacttttcccttcaaga
ccatcgcgacgacgagaccgtagataccgatgataccggccataataaccggaatcacag
acttcatgataagctccgggcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGAGGGCGACGATCATTCCGTA 398 513 897 Antisense
GATCATTCCGTAGAGTCCCAAGACT 644 419 910 Antisense
GTGGCTGTTGAGCTGTTCCACGGAC 7 493 975 Antisense
CAATTCCGATAGCATATCCGGCTCC 100 181 1014 Antisense
CAATCCACAAAGTCCGCACGTAAGT 501 179 1039 Antisense
CACGTAAGTCCGGCGGCCAAGTGAG 88 195 1055 Antisense
GGCCAAGTGAGCGAATCCCTTATTC 522 543 1069 Antisense
CAAATCGTAACCAGCACTTGCCGAC 560 191 1093 Antisense
ACCATCGCGACGACGAGACCGTAGA 134 85 1136 Antisense
GTAGATACCGATGATACCGGCCATA 115 421 1156 Antisense
AGACTTCATGATAAGCTCCGGGCGC 516 71 1195 Antisense
Sequence Source Affymetrix Proprietary Database