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[173419_at]

Description AV181201_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=g4579709 /5_PRIME_EXT_DB=GenBank Identifier /GB=AV181201 /CHR=4 /FEA=Genomic Cluster /PROTEIN_GB=BAA75066.1 /REVCOMP /DEF=Vha3 protein; Caenorhabditis elegans cDNA clone:yk617c8 : 3prime end, single read.
Cluster 6grp_total > 54      4grp_total > 43      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.1
(-3)
A 		5.4
(3)
A 		3.5
(-2)
A 		5.4
(3)
A 		2
B 3.1
(-2)
A 		8.9
(3)
A 		3.8
(-1.4)
A 		2
(-3)
A 		7
C 2.1
(-2.8)
A 		10
(3)
A 		1.8
(-3)
A 		6.1
(0.1)
A 		8
avr 2.8
(-3) 		8.1
(3) 		3
(-2.8) 		4.5
(-1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6
(2.1)
A 		1.9
(-3)
A 		3.2
(-1.4)
A 		2.3
(-2.5)
A 		2.8
(-1.9)
A 		6.7
(3)
A 		5
B 2.4
(-3)
A 		4
(-2.3)
A 		15.8
(3)
A 		4
(-2.3)
A 		3
(-2.7)
A 		4.4
(-2.1)
A 		13
C 1.7
(-1.7)
A 		1.4
(-2.1)
A 		3.7
(0.9)
A 		3.7
(0.9)
A 		0.7
(-3)
A 		5.3
(3)
A 		5
avr 3.4
(-1.7) 		2.4
(-2.8) 		7.6
(3) 		3.3
(-1.8) 		2.2
(-3) 		5.5
(0.7) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.1
(1.5)
A 		1.2
(3)
A 		0.9
(-1.5)
A 		0.8
(-3)
A 		0
B 1
(-1)
A 		2.2
(3)
A 		0.9
(-1.3)
A 		0.4
(-3)
A 		2
C 0.7
(-2.7)
A 		2.9
(3)
A 		0.6
(-3)
A 		1
(-2)
A 		2
avr 0.9
(-2.1) 		2.1
(3) 		0.8
(-2.6) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.1
(0)
A 		0.7
(-2.4)
A 		0.7
(-2.4)
A 		0.6
(-3)
A 		0.8
(-1.8)
A 		1.6
(3)
A 		1
B 0.8
(-3)
A 		1.3
(-2)
A 		3.8
(3)
A 		1.1
(-2.4)
A 		1.2
(-2.2)
A 		1.6
(-1.4)
A 		3
C 0.6
(-1.5)
A 		0.4
(-2.3)
A 		0.9
(-0.4)
A 		0.7
(-1.1)
A 		0.2
(-3)
A 		1.8
(3)
A 		2
avr 0.8
(-2.5) 		0.8
(-2.5) 		1.8
(3) 		0.8
(-2.5) 		0.7
(-3) 		1.7
(2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173419_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28258
Sequence Type Exemplar sequence
Representative Public ID AV181201 NCBI
Target Description AV181201_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=g4579709 /5_PRIME_EXT_DB=GenBank Identifier /GB=AV181201 /CHR=4 /FEA=Genomic Cluster /PROTEIN_GB=BAA75066.1 /REVCOMP /DEF=Vha3 protein; Caenorhabditis elegans cDNA clone:yk617c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV181201
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV181201 AV181201_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=g4579709 /5_PRIME_EXT_DB=GenBank Identifier /GB=AV181201 /CHR=4 /FEA=Genomic Cluster /PROTEIN_GB=BAA75066.1 /REVCOMP /DEF=Vha3 protein; Caenorhabditis elegans cDNA clone:yk617c8 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067787 11/11 Negative Strand Matching Probes A 
SNAP00000023928 9/11 Negative Strand Matching Probes None
GENEFINDER00000023937 11/11 Negative Strand Matching Probes None
Y38F2AL.4 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2314594-2315996(+) 67.05 100.0
Sequence
Target Sequence 
>C. ELEGANS:173419_AT
catgacacccattgaacagattccgacggcagatttggcggttccgtaggcggctccgag
gacggtgaagatttgggctgaagcggctcccatgtagccgaagaatggagcataggcggc
tctttcggcggtttccaagtcgtacgacattttttgtgtgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGACACCCATTGAACAGATTCCG 68 211 1219 Antisense
CCCATTGAACAGATTCCGACGGCAG 141 257 1226 Antisense
TCCGACGGCAGATTTGGCGGTTCCG 506 595 1240 Antisense
CAGATTTGGCGGTTCCGTAGGCGGC 71 205 1248 Antisense
TAGGCGGCTCCGAGGACGGTGAAGA 690 647 1265 Antisense
GAAGATTTGGGCTGAAGCGGCTCCC 691 335 1285 Antisense
CTGAAGCGGCTCCCATGTAGCCGAA 609 237 1296 Antisense
GGCTCCCATGTAGCCGAAGAATGGA 690 537 1303 Antisense
ATGGAGCATAGGCGGCTCTTTCGGC 358 51 1323 Antisense
GCGGTTTCCAAGTCGTACGACATTT 652 291 1346 Antisense
GTCGTACGACATTTTTTGTGTGAGG 58 473 1357 Antisense
Sequence Source Affymetrix Proprietary Database