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[173417_at]

Description g1916625 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F35H10.10 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F35H10.10 /WP=CE24945 /CHR=4 /FEA=Genomic Cluster /DEF=CELF35-1
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 46      6grp_total > 82      4grp_total > 59      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3038
1 2 3 4 range
A 2157.1
(1.4)
P 		2850
(3)
P 		2770.3
(2.8)
P 		199.6
(-3)
P 		2650
B 2200.1
(1.1)
P 		2964.2
(2.8)
P 		3079.5
(3)
P 		227.4
(-3)
P 		2852
C 2103.9
(0.7)
P 		2869.4
(2.2)
P 		3237.6
(3)
P 		325.7
(-3)
P 		2912
avr 2153.7
(1.1) 		2894.5
(2.7) 		3029.1
(3) 		250.9
(-3) 		2778

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2195
1 2 3 4 5 6 range
A 2632.8
(-0.4)
P 		3463.8
(1.9)
P 		2540.6
(-0.6)
P 		3071.8
(0.8)
P 		3866.5
(3)
P 		1686.7
(-3)
P 		2180
B 2311.8
(-1.6)
P 		3514.5
(1.9)
P 		3035.1
(0.5)
P 		3882.1
(3)
P 		3211.1
(1)
P 		1834.1
(-3)
P 		2048
C 2234.3
(-2)
P 		3237.1
(1.9)
P 		2796.2
(0.2)
P 		2954.7
(0.8)
P 		3527.9
(3)
P 		1982.7
(-3)
P 		1545
avr 2393
(-1) 		3405.1
(2.5) 		2790.6
(0.4) 		3302.9
(2.2) 		3535.2
(3) 		1834.5
(-3) 		1701
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1099
1 2 3 4 range
A 785.4
(3)
P 		618.7
(1.7)
P 		724.2
(2.5)
P 		29.2
(-3)
P 		756
B 701.6
(2.7)
P 		732.1
(3)
P 		713.6
(2.8)
P 		48.5
(-3)
P 		684
C 696.4
(0.6)
P 		825
(1.3)
P 		1128.4
(3)
P 		54.9
(-3)
P 		1074
avr 727.8
(2.1) 		725.3
(2) 		855.4
(3) 		44.2
(-3) 		811

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 894
1 2 3 4 5 6 range
A 485.3
(-2.5)
P 		1231.9
(3)
P 		553.3
(-2)
P 		779.1
(-0.3)
P 		1166.7
(2.5)
P 		410.6
(-3)
P 		821
B 804.4
(-1.8)
P 		1169.8
(1.7)
P 		737
(-2.5)
P 		1028.2
(0.3)
P 		1304.6
(3)
P 		683.9
(-3)
P 		621
C 828.2
(-0.4)
P 		987.7
(1.3)
P 		711.7
(-1.7)
P 		594.2
(-3)
P 		1141.6
(3)
P 		663.7
(-2.2)
P 		547
avr 706
(-1.8) 		1129.8
(2.3) 		667.3
(-2.2) 		800.5
(-0.9) 		1204.3
(3) 		586.1
(-3) 		618
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24744
Sequence Type Exemplar sequence
Representative Public ID 1916625 NCBI
Target Description g1916625 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F35H10.10 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F35H10.10 /WP=CE24945 /CHR=4 /FEA=Genomic Cluster /DEF=CELF35-1
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068999(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068999 NCBI Caenorhabditis elegans F35H10.10 (F35H10.10) mRNA, complete cds. 11/11 A 
F35H10.10 ENSEMBL cdna:known chromosome:CEL140:IV:8307301:8312921:-1 gene:F35H10.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8307322-8312909(-) 99.52 100.0
Public Domain and Genome References
Gene Title
Ensembl F35H10.10
Entrez Gene 177627 Entrez gene
SwissProt Q20073 EMBL-EBI
WormBase CE24945 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8067 metabotropic glutamate, GABA-B-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81683 Hypothetical protein F35H10.10 [Caenorhabditis elegans] ref|NP_501400.1| F35H10.10 [Caenorhabditis elegans] gb|AAB51198.1| CELF35-1 [Caenorhabditis elegans] 0.0
blast CAE58455 Hypothetical protein CBG01593 [Caenorhabditis briggsae] 0.0
blast XP_692887 PREDICTED: similar to glutamate receptor, metabotropic 2 precursor [Danio rerio] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000337 EMBL-EBI G-protein coupled receptor family 3, metabotropic glutamate receptor-like 2.0E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501400.1 7 1025-1047,1060-1080,1090-1107,1128-1150,1175-1197,1210-1232,1242-1264
F35H10.10 7 1025-1047,1060-1080,1090-1107,1128-1150,1175-1197,1210-1232,1242-1264
Sequence
Target Sequence 
>C. ELEGANS:173417_AT
caatcattgatgtacataccccctccccatcccaaaacctcctcgccgaacccccacata
attgacacgtgtataatcctcaatctttcctatttttgtgtgtaatatctccatatttgt
tacaaatatatttatgtatctagaaatgattccatgttgctagtccaactacttagcctc
tgcctccctccacaagcctacggtactattccgtcactgagattcgattcgttactgtgt
gtcacttcttttaattctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCATTGATGTACATACCCCCTC 527 181 4219 Antisense
CGAACCCCCACATAATTGACACGTG 76 253 4265 Antisense
GACACGTGTATAATCCTCAATCTTT 593 367 4282 Antisense
ATCCTCAATCTTTCCTATTTTTGTG 286 39 4294 Antisense
ATTTTTGTGTGTAATATCTCCATAT 619 15 4310 Antisense
AAATGATTCCATGTTGCTAGTCCAA 133 121 4362 Antisense
TGCTAGTCCAACTACTTAGCCTCTG 384 575 4376 Antisense
CTCCACAAGCCTACGGTACTATTCC 25 237 4406 Antisense
GGTACTATTCCGTCACTGAGATTCG 83 503 4420 Antisense
GATTCGATTCGTTACTGTGTGTCAC 52 433 4439 Antisense
CTGTGTGTCACTTCTTTTAATTCTG 291 239 4453 Antisense
Sequence Source GenBank