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[173415_s_at] transcription factor TFIID like

Description g7329166-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g7329166 /5_PRIME_EXT_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster /DEF=TBP-like factor
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 78      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 83      6grp_total > 59      4grp_total > 15      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 428.2
(3)
P 		282.9
(-3)
P 		360.4
(0.2)
P 		338.6
(-0.7)
P 		145
B 477.1
(0.5)
P 		322.7
(-2.4)
P 		288.5
(-3)
P 		613.2
(3)
P 		325
C 413.2
(2.9)
P 		377.2
(0.5)
P 		414.1
(3)
P 		327
(-3)
P 		87
avr 439.5
(3) 		327.6
(-3) 		354.3
(-1.6) 		426.3
(2.3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 437.7
(-1.9)
P 		485.7
(-0.3)
P 		404
(-3)
P 		447
(-1.6)
P 		585.8
(3)
P 		518.5
(0.8)
P 		182
B 485.4
(-0.6)
P 		412.3
(-2.9)
P 		410.6
(-3)
P 		596.6
(3)
P 		477.2
(-0.9)
P 		530.1
(0.9)
P 		186
C 584.4
(3)
P 		443.7
(-2.9)
P 		530.7
(0.8)
P 		468
(-1.9)
P 		440.6
(-3)
P 		582.9
(2.9)
P 		144
avr 502.5
(0.4) 		447.2
(-3) 		448.4
(-2.9) 		503.9
(0.5) 		501.2
(0.4) 		543.8
(3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 155.9
(3)
P 		61.4
(-2.3)
P 		94.2
(-0.5)
P 		49.6
(-3)
P 		106
B 152.1
(3)
P 		79.7
(-2.1)
P 		66.9
(-3)
P 		130.7
(1.5)
P 		85
C 136.8
(2.5)
P 		108.5
(0.6)
P 		144.3
(3)
P 		55.1
(-3)
P 		89
avr 148.3
(3) 		83.2
(-2.6) 		101.8
(-1) 		78.5
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 80.7
(-3)
P 		172.7
(2.7)
P 		88
(-2.5)
P 		113.4
(-1)
P 		176.8
(3)
P 		126.2
(-0.2)
P 		96
B 168.9
(1.2)
P 		137.3
(-0.7)
P 		99.7
(-3)
P 		158
(0.6)
P 		193.9
(2.8)
P 		197.7
(3)
P 		98
C 216.6
(3)
P 		135.4
(-1)
P 		135.1
(-1)
P 		94.1
(-3)
P 		142.6
(-0.6)
P 		195.1
(1.9)
P 		123
avr 155.4
(1.4) 		148.5
(0.8) 		107.6
(-3) 		121.8
(-1.7) 		171.1
(2.8) 		173
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173415_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22613
Sequence Type Exemplar sequence
Representative Public ID 7329166 NCBI
Target Description g7329166-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g7329166 /5_PRIME_EXT_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster /DEF=TBP-like factor
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059955(11), AF228692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059955 NCBI Caenorhabditis elegans TBP-Like Factor family member (tlf-1) (tlf-1) mRNA, complete cds. 11/11 A 
AF228692 NCBI Caenorhabditis elegans TBP-like factor mRNA, complete cds. 11/11 A 
F39H11.2 ENSEMBL cdna:known chromosome:CEL140:I:8705652:8710096:-1 gene:F39H11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8705891-8710030(-) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor TFIID like
Gene Symbol tlf-1
Ensembl F39H11.2
Entrez Gene 172676 Entrez gene
SwissProt P90869 EMBL-EBI
WormBase CE27159 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604871_AT similar to TATA box binding protein-like protein 1 (TBP-like protein 1) (TATA box binding protein-related factor 2) (TBP-related factor 2) (21-kDa TBP-like protein) cfa
CANINE_2:CFA.19736.1.S1_S_AT similar to TATA box binding protein-like protein 1 (TBP-like protein 1) (TATA box binding protein-related factor 2) (TBP-related factor 2) (21-kDa TBP-like protein) cfa
DROSOPHILA_2:1633231_A_AT TATA box binding protein-related factor 2 dm
DROSGENOME1:144157_S_AT TATA box binding protein-related factor 2 dm
CHICKEN:GGA.4434.1.S1_AT TBP-like 1 gga
CHICKEN:GGA.4434.1.S2_AT TBP-like 1 gga
HG-U133_PLUS_2:208398_S_AT TBP-like 1 hs
HG-U133A:208398_S_AT TBP-like 1 hs
HG-FOCUS:208398_S_AT TBP-like 1 hs
HG-U133A_2:208398_S_AT TBP-like 1 hs
U133_X3P:G4759233_3P_A_AT TBP-like 1 hs
HG-U95AV2:31797_AT TBP-like 1 hs
MG-U74AV2:97893_AT TATA box binding protein-like 1 mm
MU11KSUBB:MSA.24485.0_S_AT TATA box binding protein-like 1 mm
MG-U74BV2:105574_I_AT TATA box binding protein-like 1 mm
MG-U74BV2:105575_F_AT TATA box binding protein-like 1 mm
MOE430A:1431415_A_AT TATA box binding protein-like 1 mm
MOUSE430A_2:1431415_A_AT TATA box binding protein-like 1 mm
MOUSE430_2:1431415_A_AT TATA box binding protein-like 1 mm
MOE430B:1434907_AT TATA box binding protein-like 1 mm
MOUSE430_2:1434907_AT TATA box binding protein-like 1 mm
MG-U74CV2:134123_R_AT TATA box binding protein-like 1, mRNA (cDNA clone MGC:41136 IMAGE:1382180) mm
MG-U74CV2:138755_AT TATA box binding protein-like 1, mRNA (cDNA clone MGC:41136 IMAGE:1382180) mm
MU19KSUBC:TC41366_AT TATA box binding protein-like 1, mRNA (cDNA clone MGC:41136 IMAGE:1382180) mm
RG-U34C:RC_AI232431_AT TATA box binding protein-like 1 (predicted) rn
RAE230A:1373242_AT TATA box binding protein-like 1 (predicted) rn
RAT230_2:1373242_AT TATA box binding protein-like 1 (predicted) rn
RAE230B:1383384_AT TATA box binding protein-like 1 (predicted) rn
RAT230_2:1383384_AT TATA box binding protein-like 1 (predicted) rn
RG-U34B:RC_AA900574_AT TATA box binding protein-like 1 (predicted) rn
RG-U34B:RC_AI012129_AT TATA box binding protein-like 1 (predicted) rn
RG-U34C:RC_AI228170_AT TATA box binding protein-like 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
6367 transcription initiation from RNA polymerase II promoter inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5669 transcription factor TFIID complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3702 RNA polymerase II transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03082 Hypothetical protein F39H11.2 [Caenorhabditis elegans] ref|NP_492356.1| TBP-Like Factor family member (tlf-1) [Caenorhabditis elegans] gb|AAF59926.1| TBP-like factor [Caenorhabditis elegans] 0.0
blast CAB41469 TBP-like factor [Caenorhabditis elegans] 0.0
blast CAE66953 Hypothetical protein CBG12345 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR000814 EMBL-EBI Transcription factor TFIID 3.1E-31
Pfam IPR000814 EMBL-EBI Transcription factor TFIID 2.0E-32
Sequence
Target Sequence 
>C. ELEGANS:173415_S_AT
taattgatgcagcctacccattcattgtaatttttaaaaaatctcaatttgcaatcatta
tctgattacctttctacatcatctcgtcataatttctctagttttagctttctatcttcc
agtatatcttgttctttcaattgttctgtgtgcttcaaaattcatgctttatccgctttt
ttcctgttcttttctttctctgtttgccgttaccatcatcaacatcataagtcatcatcg
aatcaacacaatctcctatccatttttttgtaaaattaacacaatgatcagaaaaacaat
tctcgcttccttctagctctttctctctccacatcccactatgtgctctctacttcatgt
cttcatcatgttcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTGATGCAGCCTACCCATTCAT 278 635 1555 Antisense
TCATTATCTGATTACCTTTCTACAT 598 619 1609 Antisense
ACATCATCTCGTCATAATTTCTCTA 53 107 1630 Antisense
TAGTTTTAGCTTTCTATCTTCCAGT 509 653 1653 Antisense
ATCTTCCAGTATATCTTGTTCTTTC 434 31 1668 Antisense
TTCTTTCAATTGTTCTGTGTGCTTC 382 691 1686 Antisense
AATTCATGCTTTATCCGCTTTTTTC 668 175 1713 Antisense
CTGTTTGCCGTTACCATCATCAACA 295 239 1754 Antisense
AACACAATCTCCTATCCATTTTTTT 262 135 1799 Antisense
GAAAAACAATTCTCGCTTCCTTCTA 194 353 1845 Antisense
ACTTCATGTCTTCATCATGTTCCCC 336 103 1906 Antisense
Sequence Source GenBank