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[173414_s_at]

Description g608463-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g608463 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /DEF=ribonucleoprotein
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_high_8_8 > 34      6grp_highest_nonorm > 90      6grp_total > 26      4grp_total > 37      6grp_highest_sub > Cu      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 137.7
(3)
P 		126.8
(2.3)
P 		81
(-0.7)
A 		45.7
(-3)
P 		92
B 122
(3)
P 		99.5
(1)
P 		56
(-3)
P 		122
(3)
P 		66
C 163.3
(3)
P 		97.1
(-1.6)
M 		77.1
(-3)
P 		99.8
(-1.4)
P 		86
avr 141
(3) 		107.8
(0.1) 		71.4
(-3) 		89.2
(-1.5) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 127.3
(1.2)
P 		161.1
(3)
P 		72.6
(-1.6)
P 		45.8
(-3)
P 		59.8
(-2.3)
P 		135.3
(1.7)
P 		115
B 126.5
(2.9)
P 		127.7
(3)
P 		83.6
(-0.8)
P 		112.5
(1.7)
P 		57.3
(-3)
P 		93.1
(0.1)
P 		70
C 234.7
(3)
P 		123.9
(-1)
P 		116.4
(-1.3)
P 		95.1
(-2)
P 		114.7
(-1.3)
P 		67.7
(-3)
P 		167
avr 162.8
(3) 		137.6
(1.2) 		90.9
(-2) 		84.5
(-2.5) 		77.3
(-3) 		98.7
(-1.5) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 50.1
(3)
P 		27.5
(-0.1)
P 		21.2
(-1)
A 		6.7
(-3)
P 		43
B 38.9
(3)
P 		24.6
(-0.3)
P 		13
(-3)
P 		26
(0)
P 		26
C 54.1
(3)
P 		27.9
(-1.2)
M 		26.9
(-1.4)
P 		16.8
(-3)
P 		37
avr 47.7
(3) 		26.7
(-1) 		20.4
(-2.3) 		16.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 23.5
(-1.4)
P 		57.3
(3)
P 		15.8
(-2.4)
P 		11.6
(-3)
P 		18
(-2.2)
P 		33
(-0.2)
P 		46
B 44
(3)
P 		42.5
(2.6)
P 		20.3
(-3)
P 		29.8
(-0.6)
P 		23.3
(-2.2)
P 		34.7
(0.6)
P 		24
C 87
(3)
P 		37.8
(-1.3)
P 		29.6
(-2.1)
P 		19.1
(-3)
P 		37.1
(-1.4)
P 		22.7
(-2.7)
P 		68
avr 51.5
(3) 		45.9
(1.9) 		21.9
(-2.7) 		20.2
(-3) 		26.1
(-1.9) 		30.1
(-1.1) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173414_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26203
Sequence Type Exemplar sequence
Representative Public ID 608463 NCBI
Target Description g608463-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g608463 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /DEF=ribonucleoprotein
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076045
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T07D1.4.1 ENSEMBL cdna:known chromosome:CEL140:X:2445493:2450497:-1 gene:T07D1.4 11/11 None
T07D1.4.2 ENSEMBL cdna:known chromosome:CEL140:X:2445493:2450501:-1 gene:T07D1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2445717-2450489(-) 100.0 100.0
Public Domain and Genome References
Ensembl T07D1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83161 Feminizing gene on x protein 1 [Caenorhabditis elegans] ref|NP_508446.1| Feminizing gene On X family member (fox-1) [Caenorhabditis elegans] sp|Q10572|FOX1_CAEEL Sex determination protein fox-1 (Feminizing locus on X protein 1) 1.0E-140
blast T16825 hypothetical protein T07D1.4 - Caenorhabditis elegans 1.0E-140
blast AAA67723 ribonucleoprotein 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.7E-19
Sequence
Target Sequence 
>C. ELEGANS:173414_S_AT
aacgatattcaattcctgacctcacttttttttgactcagaaacaactttctttgttgta
aatcctctctgaaaaaacttttctcaatgtagttgtagttgtacccctttatgattcgat
acatatgtattttcgattgtatcacatttcacagcaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGATATTCAATTCCTGACCTCAC 217 145 1281 Antisense
TCCTGACCTCACTTTTTTTTGACTC 24 595 1294 Antisense
GACCTCACTTTTTTTTGACTCAGAA 10 381 1298 Antisense
GACTCAGAAACAACTTTCTTTGTTG 458 373 1314 Antisense
CTTTCTTTGTTGTAAATCCTCTCTG 236 223 1327 Antisense
ATCCTCTCTGAAAAAACTTTTCTCA 217 39 1342 Antisense
AAACTTTTCTCAATGTAGTTGTAGT 135 127 1355 Antisense
AGTTGTAGTTGTACCCCTTTATGAT 163 59 1371 Antisense
AGTTGTACCCCTTTATGATTCGATA 411 63 1377 Antisense
ACATATGTATTTTCGATTGTATCAC 677 105 1401 Antisense
GATTGTATCACATTTCACAGCAACG 469 435 1415 Antisense
Sequence Source GenBank