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[173411_s_at]

Description AV199892_rc /REP_DB=TREMBL Accession /GB=AV199892 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk553b7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 99      4grp_high_8_8 > 29      6grp_total > 99      4grp_total > 33      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 200
(-3)
P 		269.2
(-0)
P 		277.1
(0.3)
M 		339.9
(3)
P 		140
B 201.7
(-3)
A 		232.7
(-0.8)
P 		242.2
(-0.2)
P 		287.8
(3)
P 		86
C 181
(-3)
A 		386.2
(3)
P 		243.6
(-1.2)
P 		269.7
(-0.4)
P 		205
avr 194.2
(-3) 		296
(2.8) 		254.3
(0.4) 		299.1
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10268
1 2 3 4 5 6 range
A 250.2
(-2.9)
P 		161.4
(-3)
A 		121.6
(-3)
P 		189.1
(-3)
P 		7723.5
(2.2)
P 		8851.9
(3)
P 		8730
B 235.7
(-2.9)
P 		182.7
(-3)
M 		153.9
(-3)
P 		169
(-3)
A 		7311.8
(1.9)
P 		8973
(3)
P 		8819
C 172.7
(-3)
A 		205.4
(-3)
P 		180.3
(-3)
P 		168.5
(-3)
P 		10389.8
(3)
P 		8457.5
(1.9)
P 		10221
avr 219.5
(-3) 		183.2
(-3) 		151.9
(-3) 		175.5
(-3) 		8475
(2.8) 		8760.8
(3) 		8609
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 72.8
(3)
P 		58.4
(-0.8)
P 		72.4
(2.9)
M 		49.8
(-3)
P 		23
B 64.3
(3)
A 		57.5
(-2)
P 		56.1
(-3)
P 		61.3
(0.8)
P 		8
C 59.9
(-1.7)
A 		111
(3)
P 		84.9
(0.6)
P 		45.5
(-3)
P 		66
avr 65.7
(0.5) 		75.6
(3) 		71.1
(1.8) 		52.2
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3336
1 2 3 4 5 6 range
A 46.1
(-2.9)
P 		57.4
(-2.9)
A 		26.5
(-3)
P 		48
(-2.9)
P 		2330.6
(3)
P 		2155.2
(2.5)
P 		2304
B 82
(-2.9)
P 		60.8
(-3)
M 		37.4
(-3)
P 		44.8
(-3)
A 		2970.7
(2.3)
P 		3346
(3)
P 		3309
C 64
(-2.9)
A 		62.7
(-2.9)
P 		45.9
(-3)
P 		33.9
(-3)
P 		3362
(3)
P 		2831.2
(2)
P 		3328
avr 64
(-2.9) 		60.3
(-3) 		36.6
(-3) 		42.2
(-3) 		2887.8
(3) 		2777.5
(2.8) 		2851
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173411_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27922
Sequence Type Exemplar sequence
Representative Public ID AV199892 NCBI
Target Description AV199892_rc /REP_DB=TREMBL Accession /GB=AV199892 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk553b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028103(11), NM_001028105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028103 NCBI Caenorhabditis elegans K07H8.6a (vitellogenin) mRNA, complete cds. 11/11 None
NM_001028105 NCBI Caenorhabditis elegans K07H8.6c (vitellogenin) mRNA, complete cds. 11/11 None
SNAP00000006912 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8261115:8266348:1 11/11 None
GENEFINDER00000006932 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8261154:8266348:1 11/11 None
K07H8.6c ENSEMBL cdna:known chromosome:CEL140:IV:8261154:8266348:1 gene:K07H8.6 11/11 A 
K07H8.6a ENSEMBL cdna:known chromosome:CEL140:IV:8261154:8266445:1 gene:K07H8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028104 2/11 Cross Hyb Matching Probes None
K07H8.6b 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177619 3 2 NM_001028103 173411_s_at (11), 190649_at (11)
NM_001028105 173411_s_at (11), 190649_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8266034-8266387(+) 94.74 94.74
Public Domain and Genome References
Ensembl K07H8.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04423 Vitellogenin structural genes (yolk protein genes) protein 6, isoform a [Caenorhabditis elegans] ref|NP_001023274.1| K07H8.6a [Caenorhabditis elegans] sp|P18948|VIT6_CAEEL Vitellogenin 6 precursor 0.0
blast AAQ91901 Vitellogenin structural genes (yolk protein genes) protein 6, isoform c [Caenorhabditis elegans] ref|NP_001023276.1| K07H8.6c [Caenorhabditis elegans] pir||F88750 protein vit-6 [imported] - Caenorhabditis elegans 0.0
blast CAA39670 vitellogenin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 2.5E-40
Pfam IPR001747 EMBL-EBI Lipid transport protein, N-terminal 1.0E-126
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 2.5E-40
Pfam IPR001747 EMBL-EBI Lipid transport protein, N-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173411_S_AT
gatctgcttcacccagaagccagttcttcgctgccaaaacggaaagtcacaggagtccaa
gaagcaaaagacctccgtctactgcctcccatcctccaactcatgggctcgccgtcaaat
gcgcgagatccgccgtgagccactcgcccaatggccagagcacaagctccgcaaccttcg
tgaccaaccacaaatggaggagcgcaccgttcgcgtcgccgtcgaccagaagtgcgacaa
gttcgactattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTGCTTCACCCAGAAGCCAGTT 84 419 48 Antisense
GCCAAAACGGAAAGTCACAGGAGTC 693 275 80 Antisense
AAGTCACAGGAGTCCAAGAAGCAAA 416 157 91 Antisense
ATGGGCTCGCCGTCAAATGCGCGAG 138 51 150 Antisense
TCAAATGCGCGAGATCCGCCGTGAG 706 627 162 Antisense
CTCGCCCAATGGCCAGAGCACAAGC 234 233 190 Antisense
AATGGCCAGAGCACAAGCTCCGCAA 144 163 197 Antisense
CAACCTTCGTGACCAACCACAAATG 19 187 219 Antisense
CAAATGGAGGAGCGCACCGTTCGCG 89 193 238 Antisense
CGTCGCCGTCGACCAGAAGTGCGAC 688 243 261 Antisense
GAAGTGCGACAAGTTCGACTATTGA 595 335 276 Antisense
Sequence Source Affymetrix Proprietary Database