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[173410_s_at]

Description AV199430_rc /REP_DB=TREMBL Accession /GB=AV199430 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk545h3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      6grp_highest_nonorm > 91      6grp_total > 49      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 218.9
(3)
P 		107
(-2.3)
A 		91.8
(-3)
A 		196.3
(1.9)
P 		127
B 186.2
(3)
P 		135.7
(-0.8)
A 		106.3
(-3)
A 		175.5
(2.2)
P 		80
C 186.6
(2.2)
P 		104.4
(-3)
A 		115.8
(-2.3)
P 		199.6
(3)
P 		95
avr 197.2
(3) 		115.7
(-2.3) 		104.6
(-3) 		190.5
(2.6) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 226.5
(2)
P 		204.1
(0.2)
P 		174.8
(-2.2)
P 		165.7
(-3)
P 		232.5
(2.5)
P 		238.4
(3)
P 		73
B 230
(1.7)
P 		228.4
(1.6)
P 		201.4
(0)
P 		151.6
(-3)
P 		227.9
(1.6)
P 		251.2
(3)
P 		100
C 201.3
(-0.8)
P 		273.2
(1.7)
P 		141.1
(-3)
P 		160.5
(-2.3)
P 		225.5
(0)
P 		308.6
(3)
P 		168
avr 219.3
(0.4) 		235.2
(1.3) 		172.4
(-2.3) 		159.3
(-3) 		228.6
(0.9) 		266.1
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 79.7
(3)
P 		23.2
(-3)
A 		24
(-2.9)
A 		28.7
(-2.4)
P 		57
B 59.4
(3)
P 		33.5
(-1.5)
A 		24.6
(-3)
A 		37.4
(-0.8)
P 		35
C 61.8
(3)
P 		30
(-3)
A 		40.4
(-1)
P 		33.7
(-2.3)
P 		32
avr 67
(3) 		28.9
(-3) 		29.7
(-2.9) 		33.3
(-2.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 41.7
(-2.4)
P 		72.6
(3)
P 		38.1
(-3)
P 		42
(-2.3)
P 		70.2
(2.6)
P 		58
(0.5)
P 		35
B 80
(1.5)
P 		76
(1)
P 		48.9
(-2)
P 		40.1
(-3)
P 		92.6
(2.9)
P 		93.7
(3)
P 		54
C 74.6
(0.6)
P 		83.4
(1.3)
P 		35.9
(-2.7)
P 		32.3
(-3)
P 		73
(0.4)
P 		103.3
(3)
P 		71
avr 65.4
(0.5) 		77.3
(2) 		41
(-2.6) 		38.1
(-3) 		78.6
(2.2) 		85
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173410_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27677
Sequence Type Exemplar sequence
Representative Public ID AV199430 NCBI
Target Description AV199430_rc /REP_DB=TREMBL Accession /GB=AV199430 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk545h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060972 NCBI Caenorhabditis elegans Y87G2A.1 (Y87G2A.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000019604 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13529291:13534256:1 11/11 None
Y87G2A.1 ENSEMBL cdna:known chromosome:CEL140:I:13522663:13534310:1 gene:Y87G2A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13533964-13534225(+) 85.86 85.86
Public Domain and Genome References
Gene Title
Ensembl Y87G2A.1
Entrez Gene 173221 Entrez gene
SwissProt Q9U1Q6 EMBL-EBI
WormBase CE24681 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60426 Hypothetical protein Y87G2A.1 [Caenorhabditis elegans] ref|NP_493373.1| Y87G2A.1 [Caenorhabditis elegans] 0.0
blast T27457 hypothetical protein Y87G2A.e - Caenorhabditis elegans 0.0
blast T27458 hypothetical protein Y87G2A.f - Caenorhabditis elegans 1.0E-114
blast CAE63543 Hypothetical protein CBG08025 [Caenorhabditis briggsae] 2.0E-74
blast CAB60426 Hypothetical protein Y87G2A.1 [Caenorhabditis elegans] ref|NP_493373.1| Y87G2A.1 [Caenorhabditis elegans] 3.0E-65
blast CAE63543 Hypothetical protein CBG08025 [Caenorhabditis briggsae] 1.0E-47
Sequence
Target Sequence 
>C. ELEGANS:173410_S_AT
agaagcatccacgtcattggctgacgagttgccacgtgtcactcgtgaagaatccacgtc
atcaaatacttctggccacgtggcaggtgacgtcacaacgagaagcggaagagcacgaaa
accaccggcacgactacttgatgattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCATCCACGTCATTGGCTGAC 442 73 122 Antisense
TTGGCTGACGAGTTGCCACGTGTCA 345 707 138 Antisense
AGTTGCCACGTGTCACTCGTGAAGA 7 65 148 Antisense
GTCACTCGTGAAGAATCCACGTCAT 358 465 159 Antisense
CACGTCATCAAATACTTCTGGCCAC 466 199 176 Antisense
TCATCAAATACTTCTGGCCACGTGG 87 621 180 Antisense
TACTTCTGGCCACGTGGCAGGTGAC 683 643 188 Antisense
CCACGTGGCAGGTGACGTCACAACG 469 271 197 Antisense
GGTGACGTCACAACGAGAAGCGGAA 438 499 207 Antisense
GCGGAAGAGCACGAAAACCACCGGC 697 291 226 Antisense
CACCGGCACGACTACTTGATGATTG 337 201 244 Antisense
Sequence Source Affymetrix Proprietary Database