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[173409_s_at]

Description AV178449_rc /REP_DB=TREMBL Accession /GB=AV178449 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk566c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 84      6grp_total > 68      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 459.9
(2.4)
P 		482
(3)
P 		319.1
(-1.5)
P 		264.9
(-3)
P 		217
B 668.5
(3)
P 		370.8
(-1.7)
P 		364.3
(-1.8)
P 		284.4
(-3)
P 		384
C 514.9
(3)
P 		377.4
(-2.8)
P 		441.7
(-0.1)
P 		373.2
(-3)
P 		142
avr 547.8
(3) 		410.1
(-0.4) 		375
(-1.3) 		307.5
(-3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 554
1 2 3 4 5 6 range
A 564.4
(-1.3)
P 		569.6
(-1.2)
P 		476.1
(-3)
P 		499.4
(-2.6)
P 		580
(-1)
P 		788.6
(3)
P 		313
B 592.6
(-1.8)
P 		656.1
(-0.8)
P 		523
(-2.9)
P 		515.8
(-3)
P 		552.2
(-2.4)
P 		904.7
(3)
P 		389
C 592.5
(-0.3)
P 		658.6
(0.4)
P 		566.2
(-0.6)
P 		350.9
(-3)
P 		651.7
(0.3)
P 		897.5
(3)
P 		547
avr 583.2
(-1.1) 		628.1
(-0.5) 		521.8
(-2) 		455.4
(-3) 		594.6
(-1) 		863.6
(3) 		408
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 167.4
(3)
P 		104.6
(0.1)
P 		83.4
(-0.9)
P 		38.8
(-3)
P 		129
B 213.2
(3)
P 		91.6
(-1.8)
P 		84.4
(-2.1)
P 		60.6
(-3)
P 		153
C 170.4
(3)
P 		108.5
(-0.5)
P 		153.9
(2.1)
P 		62.9
(-3)
P 		108
avr 183.7
(3) 		101.6
(-0.8) 		107.2
(-0.5) 		54.1
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 104.1
(-3)
P 		202.6
(3)
P 		103.7
(-3)
P 		126.7
(-1.6)
P 		175
(1.3)
P 		192
(2.4)
P 		99
B 206.2
(-0.7)
P 		218.4
(-0.4)
P 		127
(-3)
P 		136.6
(-2.7)
P 		224.4
(-0.2)
P 		337.4
(3)
P 		210
C 219.6
(0.9)
P 		201
(0.4)
P 		144.1
(-1.1)
P 		70.6
(-3)
P 		210.9
(0.7)
P 		300.4
(3)
P 		230
avr 176.6
(-0.6) 		207.3
(0.5) 		124.9
(-2.5) 		111.3
(-3) 		203.4
(0.3) 		276.6
(3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173409_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27728
Sequence Type Exemplar sequence
Representative Public ID AV178449 NCBI
Target Description AV178449_rc /REP_DB=TREMBL Accession /GB=AV178449 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk566c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073853 NCBI Caenorhabditis elegans F15B9.5 (F15B9.5) mRNA, complete cds. 11/11 A 
SNAP00000032634 ENSEMBL cdna:SNAP chromosome:CEL140:V:13009712:13011509:-1 11/11 None
GENEFINDER00000032643 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13009712:13015366:-1 11/11 None
F15B9.5 ENSEMBL cdna:known chromosome:CEL140:V:13009572:13014224:-1 gene:F15B9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13009650-13009977(-) 78.5 78.5
Public Domain and Genome References
Gene Title
Ensembl F15B9.5
Entrez Gene 179787 Entrez gene
SwissProt Q19476 EMBL-EBI
WormBase CE09410 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01420 Hypothetical protein F15B9.5 [Caenorhabditis elegans] ref|NP_506254.1| F15B9.5 [Caenorhabditis elegans] 0.0
blast CAE64694 Hypothetical protein CBG09476 [Caenorhabditis briggsae] 1.0E-170
blast CAE64694 Hypothetical protein CBG09476 [Caenorhabditis briggsae] 1.0E-165
blast CAB01420 Hypothetical protein F15B9.5 [Caenorhabditis elegans] ref|NP_506254.1| F15B9.5 [Caenorhabditis elegans] 1.0E-131
blast CAE64694 Hypothetical protein CBG09476 [Caenorhabditis briggsae] 1.0E-114
blast CAE63109 Hypothetical protein CBG07404 [Caenorhabditis briggsae] 4.0E-17
blast CAE63109 Hypothetical protein CBG07404 [Caenorhabditis briggsae] 6.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 4.7E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506254.1 2 130-147,349-371
F15B9.5 2 130-147,349-371
SNAP00000032634 1 222-244
GENEFINDER00000032643 1 542-564
Sequence
Target Sequence 
>C. ELEGANS:173409_S_AT
atgctcggacgattcctttcgaatcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnccgcggatatggataccagggtggtggctcgaatccatctggacagcaagga
ccagtttacgatgataatggaggacaaggtggaggtggattgtatccttctcaagaggtc
aaagatcgtggtggtggtg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCGGACGATTCCTTTCGAATC 670 41 22 Antisense
CCGCGGATATGGATACCAGGGTGGT 13 263 90 Antisense
ATACCAGGGTGGTGGCTCGAATCCA 260 23 102 Antisense
GTGGCTCGAATCCATCTGGACAGCA 658 491 113 Antisense
GGCTCGAATCCATCTGGACAGCAAG 229 539 115 Antisense
GGACAGCAAGGACCAGTTTACGATG 665 525 130 Antisense
GCAAGGACCAGTTTACGATGATAAT 110 321 135 Antisense
GATAATGGAGGACAAGGTGGAGGTG 205 365 154 Antisense
GGTGGAGGTGGATTGTATCCTTCTC 466 499 169 Antisense
TGTATCCTTCTCAAGAGGTCAAAGA 255 559 182 Antisense
GAGGTCAAAGATCGTGGTGGTGGTG 423 403 196 Antisense
Sequence Source Affymetrix Proprietary Database