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[173408_s_at]

Description AU113749_rc /REP_DB=TREMBL Accession /GB=AU113749 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 54      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 29      6grp_total > 44      4grp_total > 17      6grp_highest_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15741
1 2 3 4 range
A 15432.5
(-3)
P 		20219.9
(-0.9)
P 		19094.5
(-1.4)
P 		29417.5
(3)
P 		13985
B 13676.5
(-3)
P 		17129.2
(-1.1)
P 		16374.6
(-1.5)
P 		24492.1
(3)
P 		10816
C 14225.8
(-3)
P 		16597.3
(-1.8)
P 		15842.5
(-2.2)
P 		26454.3
(3)
P 		12229
avr 14444.9
(-3) 		17982.1
(-1.3) 		17103.9
(-1.7) 		26788
(3) 		12343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4965
1 2 3 4 5 6 range
A 16393.5
(3)
P 		14759.2
(0.4)
P 		14413.2
(-0.2)
P 		14210.2
(-0.5)
P 		12634.4
(-3)
P 		15390.2
(1.4)
P 		3759
B 12796.6
(-3)
P 		12839
(-2.8)
P 		13396.2
(-0.1)
P 		12859.9
(-2.7)
P 		14036.5
(3)
P 		13328.8
(-0.4)
P 		1240
C 12560.8
(-1.2)
P 		14405.5
(1.8)
P 		15070.5
(2.9)
P 		11428.4
(-3)
P 		15113.9
(3)
P 		12974.6
(-0.5)
P 		3686
avr 13917
(1.5) 		14001.2
(1.8) 		14293.3
(3) 		12832.8
(-3) 		13928.3
(1.5) 		13897.9
(1.4) 		1461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1825
1 2 3 4 range
A 5619
(3)
P 		4389.2
(-2.6)
P 		4991.7
(0.1)
P 		4306.2
(-3)
P 		1313
B 4361.3
(-0.6)
P 		4230.5
(-1.2)
P 		3794.4
(-3)
P 		5219.3
(3)
P 		1425
C 4709.2
(-1.6)
P 		4771.8
(-1.2)
P 		5521.6
(3)
P 		4460.6
(-3)
P 		1061
avr 4896.5
(3) 		4463.8
(-3) 		4769.2
(1.2) 		4662
(-0.3) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3405
1 2 3 4 5 6 range
A 3022
(-3)
P 		5249.1
(3)
P 		3138.9
(-2.7)
P 		3604
(-1.4)
P 		3812.5
(-0.9)
P 		3747
(-1)
P 		2227
B 4452.6
(-0.1)
P 		4273.6
(-0.5)
P 		3253
(-3)
P 		3406.1
(-2.6)
P 		5702.9
(3)
P 		4970.2
(1.2)
P 		2450
C 4655.7
(2.5)
P 		4395.6
(1.9)
P 		3835.7
(0.6)
P 		2298.3
(-3)
P 		4890.6
(3)
P 		4343.3
(1.7)
P 		2592
avr 4043.4
(0.3) 		4639.4
(2.4) 		3409.2
(-1.9) 		3102.8
(-3) 		4802
(3) 		4353.5
(1.4) 		1699
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173408_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27673
Sequence Type Exemplar sequence
Representative Public ID AU113749 NCBI
Target Description AU113749_rc /REP_DB=TREMBL Accession /GB=AU113749 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073399(11), NM_182325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073399 NCBI Caenorhabditis elegans F17C11.9a (F17C11.9) mRNA, complete cds. 11/11 A 
NM_182325 NCBI Caenorhabditis elegans F17C11.9b (F17C11.9) mRNA, complete cds. 11/11 A 
SNAP00000033902 ENSEMBL cdna:SNAP chromosome:CEL140:V:10968412:10970377:1 11/11 None
GENEFINDER00000033912 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10968502:10970377:1 11/11 None
F17C11.9a ENSEMBL cdna:known chromosome:CEL140:V:10968306:10970508:1 gene:F17C11.9 11/11 None
F17C11.9b ENSEMBL cdna:known chromosome:CEL140:V:10968650:10970377:1 gene:F17C11.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10969907-10970401(+) 90.45 90.45
Public Domain and Genome References
Ensembl F17C11.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96631 Hypothetical protein F17C11.9a [Caenorhabditis elegans] ref|NP_505800.1| F17C11.9a [Caenorhabditis elegans] sp|P54412|EF1G_CAEEL Probable elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma) 0.0
blast CAE75137 Hypothetical protein CBG23066 [Caenorhabditis briggsae] 0.0
blast CAD56569 Hypothetical protein F17C11.9b [Caenorhabditis elegans] ref|NP_872125.1| F17C11.9b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.6E-16
Pfam IPR001662 EMBL-EBI Elongation factor 1, gamma chain 3.2E-86
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.6E-16
Pfam IPR001662 EMBL-EBI Elongation factor 1, gamma chain 3.2E-86
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.6E-16
Pfam IPR001662 EMBL-EBI Elongation factor 1, gamma chain 3.2E-86
Sequence
Target Sequence 
>C. ELEGANS:173408_S_AT
tgaagaagaatgctttcgcctccatgattcttttcggaaccgacaacaattcgaccatct
caggaatctgggtgtggaagggtgacaagctcgccttcgaactcagcccagactggcagg
ttgattacgaatcgtacacctggacaaagcttgacgccaagtccgatgccaccaagaagg
aagtcaacgagtatcttatgtgggagggagacttcggaggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGAAGAATGCTTTCGCCTCCAT 236 575 38 Antisense
TCGCCTCCATGATTCTTTTCGGAAC 24 599 53 Antisense
GAACCGACAACAATTCGACCATCTC 213 347 74 Antisense
CGACCATCTCAGGAATCTGGGTGTG 41 251 89 Antisense
GAAGGGTGACAAGCTCGCCTTCGAA 526 333 114 Antisense
CGAACTCAGCCCAGACTGGCAGGTT 107 251 135 Antisense
GACTGGCAGGTTGATTACGAATCGT 271 375 148 Antisense
GAATCGTACACCTGGACAAAGCTTG 538 325 166 Antisense
CAAAGCTTGACGCCAAGTCCGATGC 570 191 182 Antisense
GTCAACGAGTATCTTATGTGGGAGG 549 463 220 Antisense
ATGTGGGAGGGAGACTTCGGAGGAA 137 47 235 Antisense
Sequence Source Affymetrix Proprietary Database