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[173398_s_at]

Description AV198760_rc /REP_DB=TREMBL Accession /GB=AV198760 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk380c10 : 3prime end, single read.
Cluster 6grp_total > 17      4grp_total > 47      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 136.4
(3)
P 		22.9
(-2.1)
A 		20.2
(-2.3)
A 		4.1
(-3)
A 		132
B 173
(3)
P 		8.4
(-2.8)
A 		3.5
(-3)
A 		4.9
(-3)
A 		170
C 142.6
(3)
P 		7.5
(-2.8)
A 		2
(-3)
A 		5.8
(-2.8)
A 		141
avr 150.7
(3) 		12.9
(-2.7) 		8.6
(-2.8) 		4.9
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 71.3
(2.6)
M 		7
(-3)
A 		76.3
(3)
A 		51.9
(0.9)
A 		37.5
(-0.4)
A 		25.4
(-1.4)
A 		69
B 123.5
(3)
P 		74.5
(0.1)
A 		88.1
(0.9)
A 		22.5
(-3)
A 		41.4
(-1.9)
A 		46.8
(-1.6)
P 		101
C 94.7
(3)
P 		43.5
(-0.5)
A 		7.1
(-3)
A 		10
(-2.8)
A 		22.9
(-1.9)
A 		32.5
(-1.3)
A 		88
avr 96.5
(3) 		41.7
(-1.8) 		57.2
(-0.4) 		28.1
(-3) 		33.9
(-2.5) 		34.9
(-2.4) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 49.7
(3)
P 		5
(-2.5)
A 		5.3
(-2.4)
A 		0.6
(-3)
A 		49
B 55.2
(3)
P 		2.1
(-2.9)
A 		0.8
(-3)
A 		1
(-3)
A 		54
C 47.2
(3)
P 		2.2
(-2.8)
A 		0.7
(-3)
A 		1
(-3)
A 		47
avr 50.7
(3) 		3.1
(-2.7) 		2.3
(-2.8) 		0.9
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 13.1
(1.5)
M 		2.5
(-3)
A 		16.6
(3)
A 		13.2
(1.6)
A 		11.3
(0.7)
A 		6.2
(-1.4)
A 		14
B 43
(3)
P 		24.8
(0)
A 		21.4
(-0.5)
A 		6
(-3)
A 		16.8
(-1.2)
A 		17.5
(-1.1)
P 		37
C 35.1
(3)
P 		13.3
(-0.9)
A 		1.8
(-3)
A 		2
(-3)
A 		7.4
(-2)
A 		10.9
(-1.4)
A 		33
avr 30.4
(3) 		13.5
(-1.4) 		13.3
(-1.4) 		7.1
(-3) 		11.8
(-1.8) 		11.5
(-1.9) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173398_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27816
Sequence Type Exemplar sequence
Representative Public ID AV198760 NCBI
Target Description AV198760_rc /REP_DB=TREMBL Accession /GB=AV198760 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk380c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075529 NCBI Caenorhabditis elegans F53H2.2 (F53H2.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000018993 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20392147:20394856:1 11/11 None
F53H2.2 ENSEMBL cdna:known chromosome:CEL140:V:20392147:20392783:1 gene:F53H2.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018991 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F53H2.2
Entrez Gene 180337 Entrez gene
SwissProt Q9U3E5 EMBL-EBI
WormBase CE19887 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507930.1 2 5-27,47-66
F53H2.2 2 5-27,47-66
GENEFINDER00000018993 2 7-29,53-75
Sequence
Target Sequence 
>C. ELEGANS:173398_S_AT
tcaatgcagtatggctatggatatgggtacccagggaatgatgggcggctaccatggtta
tccgggaatgatgggcggttacggtatgcggcgaatgggttacggtatgggtatgggaat
gtaccgtcctggactcatgggaatgctcatgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATGCAGTATGGCTATGGATATG 259 631 182 Antisense
ATGGCTATGGATATGGGTACCCAGG 208 51 192 Antisense
ATGATGGGCGGCTACCATGGTTATC 141 47 219 Antisense
GCGGCTACCATGGTTATCCGGGAAT 549 291 226 Antisense
CATGGTTATCCGGGAATGATGGGCG 357 207 234 Antisense
ATGATGGGCGGTTACGGTATGCGGC 88 43 249 Antisense
GCGGTTACGGTATGCGGCGAATGGG 164 285 256 Antisense
GGTATGCGGCGAATGGGTTACGGTA 610 499 264 Antisense
GTATGGGAATGTACCGTCCTGGACT 109 457 292 Antisense
ACCGTCCTGGACTCATGGGAATGCT 257 89 304 Antisense
GGACTCATGGGAATGCTCATGGGAA 213 525 312 Antisense
Sequence Source Affymetrix Proprietary Database