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[173397_at]

Description AV177338_rc /REP_DB=TREMBL Accession /GB=AV177338 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk527e12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 90      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_total > 01      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 477.3
(-0)
P 		423.7
(-1)
P 		314.8
(-3)
P 		643.7
(3)
P 		329
B 366
(0)
P 		415
(3)
P 		316.2
(-3)
P 		412.3
(2.8)
P 		99
C 421.2
(2.5)
P 		406.4
(2)
P 		264.6
(-3)
P 		434
(3)
P 		169
avr 421.5
(0.7) 		415
(0.5) 		298.5
(-3) 		496.7
(3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 324.5
(2.4)
P 		292.7
(0.7)
P 		223.8
(-3)
P 		231.8
(-2.6)
P 		336.1
(3)
P 		293
(0.7)
P 		112
B 291.8
(-1.4)
P 		339.6
(3)
P 		316.7
(0.9)
P 		313.7
(0.6)
P 		318.1
(1)
P 		274.3
(-3)
P 		65
C 202.5
(-2.5)
P 		301
(3)
P 		193
(-3)
M 		237
(-0.6)
P 		294.5
(2.6)
P 		297.7
(2.8)
P 		108
avr 272.9
(-0.6) 		311.1
(2.6) 		244.5
(-3) 		260.8
(-1.6) 		316.2
(3) 		288.3
(0.7) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 173.8
(3)
P 		92
(-2.4)
P 		82.3
(-3)
P 		94.2
(-2.2)
P 		92
B 116.7
(3)
P 		102.5
(1)
P 		73.3
(-3)
P 		87.9
(-1)
P 		43
C 139.4
(3)
P 		116.8
(1)
P 		92.2
(-1.3)
P 		73.2
(-3)
P 		66
avr 143.3
(3) 		103.8
(-0.9) 		82.6
(-3) 		85.1
(-2.8) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 59.8
(-1.8)
P 		104.1
(3)
P 		48.7
(-3)
P 		58.8
(-1.9)
P 		101.4
(2.7)
P 		71.3
(-0.6)
P 		55
B 101.5
(-0.2)
P 		113
(1.1)
P 		76.9
(-3)
P 		83.1
(-2.3)
P 		129.3
(3)
P 		102.3
(-0.1)
P 		52
C 75
(0.2)
P 		91.9
(2.1)
P 		49.1
(-2.8)
M 		47.7
(-3)
P 		95.3
(2.5)
P 		99.6
(3)
P 		52
avr 78.8
(-0.6) 		103
(2.3) 		58.2
(-3) 		63.2
(-2.4) 		108.7
(3) 		91.1
(0.9) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27910
Sequence Type Exemplar sequence
Representative Public ID AV177338 NCBI
Target Description AV177338_rc /REP_DB=TREMBL Accession /GB=AV177338 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk527e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058517 NCBI Caenorhabditis elegans Y20F4.4 (Y20F4.4) mRNA, complete cds. 11/11 A 
SNAP00000004335 ENSEMBL cdna:SNAP chromosome:CEL140:I:2034533:2037326:-1 10/11 None
GENEFINDER00000004345 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2034533:2039630:-1 10/11 None
Y20F4.4 ENSEMBL cdna:known chromosome:CEL140:I:2034385:2043813:-1 gene:Y20F4.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2034386-2034688(-) 99.34 99.34
Public Domain and Genome References
Gene Title
Ensembl Y20F4.4
Entrez Gene 245999 Entrez gene
SwissProt Q95XA7 EMBL-EBI
WormBase CE30313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490918 Y20F4.4 [Caenorhabditis elegans] gb|AAL00866.2| Hypothetical protein Y20F4.4 [Caenorhabditis elegans] 0.0
blast CAH10807 Hypothetical protein K01A11.5 [Caenorhabditis elegans] ref|NP_001022648.1| K01A11.5 [Caenorhabditis elegans] 0.0
blast CAA16331 Hypothetical protein Y43F4B.2 [Caenorhabditis elegans] ref|NP_499739.1| Y43F4B.2 [Caenorhabditis elegans] 0.0
blast NP_490918 Y20F4.4 [Caenorhabditis elegans] gb|AAL00866.2| Hypothetical protein Y20F4.4 [Caenorhabditis elegans] 4.0E-70
Sequence
Target Sequence 
>C. ELEGANS:173397_AT
acaagctacgcgagacgcaatgatggaaagcgtcacccatcaaaatcgcgaagctccaga
gacgaccgagaccatagacgtgaccgggactatgacagacgccgtggagatgaccgccga
cgggataaccacagccacccgtataggagacattaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGCTACGCGAGACGCAATGATG 202 113 13 Antisense
TACGCGAGACGCAATGATGGAAAGC 357 649 19 Antisense
ATCGCGAAGCTCCAGAGACGACCGA 596 37 57 Antisense
AAGCTCCAGAGACGACCGAGACCAT 657 149 63 Antisense
GACGACCGAGACCATAGACGTGACC 542 377 73 Antisense
CGAGACCATAGACGTGACCGGGACT 335 249 79 Antisense
GACCGGGACTATGACAGACGCCGTG 545 365 94 Antisense
TGACAGACGCCGTGGAGATGACCGC 593 571 105 Antisense
TGACCGCCGACGGGATAACCACAGC 187 569 123 Antisense
TAACCACAGCCACCCGTATAGGAGA 324 627 138 Antisense
GCCACCCGTATAGGAGACATTAATC 446 277 146 Antisense
Sequence Source Affymetrix Proprietary Database