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[173393_s_at]

Description AV199436_rc /REP_DB=TREMBL Accession /GB=AV199436 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk546a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 74      6grp_total > 64      4grp_total > 17      6grp_highest_sub > 03      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2116
1 2 3 4 range
A 1092.9
(-3)
P 		1537.2
(0.1)
P 		1106.5
(-2.9)
P 		1953
(3)
P 		860
B 927.4
(-3)
P 		1321.8
(-1.8)
P 		1477.4
(-1.3)
P 		2821.5
(3)
P 		1894
C 1282.5
(-3)
P 		1503.7
(-2.2)
P 		1388.3
(-2.6)
P 		3043.4
(3)
P 		1761
avr 1100.9
(-3) 		1454.2
(-1.6) 		1324.1
(-2.1) 		2606
(3) 		1505

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 413.2
(-3)
P 		801.1
(0.9)
P 		1007.3
(3)
P 		724.8
(0.1)
P 		444.3
(-2.7)
P 		587.4
(-1.2)
P 		594
B 599.6
(-3)
P 		767.3
(-0.9)
P 		1073.2
(3)
P 		842.8
(0.1)
P 		600.3
(-3)
P 		758.8
(-1)
P 		474
C 711.9
(2.4)
P 		569.5
(-2.2)
P 		653.6
(0.5)
P 		724.2
(2.8)
P 		544.8
(-3)
P 		731.6
(3)
P 		187
avr 574.9
(-2.3) 		712.6
(-0.1) 		911.4
(3) 		763.9
(0.7) 		529.8
(-3) 		692.6
(-0.4) 		382
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 315
1 2 3 4 range
A 397.9
(3)
P 		333.7
(-0.4)
P 		289.3
(-2.8)
P 		285.9
(-3)
P 		112
B 295.7
(-3)
P 		326.5
(-2.4)
P 		342.4
(-2.1)
P 		601.3
(3)
P 		306
C 424.5
(-3)
P 		432.3
(-2.5)
P 		483.9
(1)
P 		513.2
(3)
P 		89
avr 372.7
(-2.5) 		364.2
(-3) 		371.9
(-2.5) 		466.8
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 76.2
(-3)
P 		284.9
(3)
P 		219.4
(1.1)
P 		183.8
(0.1)
P 		134.1
(-1.3)
P 		143
(-1.1)
P 		209
B 208.6
(-3)
P 		255.4
(0.8)
P 		260.6
(1.2)
P 		223.2
(-1.8)
P 		243.9
(-0.1)
P 		282.9
(3)
P 		74
C 263.9
(3)
P 		173.8
(-1.6)
P 		166.3
(-2)
P 		145.6
(-3)
P 		176.3
(-1.4)
P 		244.9
(2)
P 		118
avr 182.9
(-3) 		238
(3) 		215.4
(0.5) 		184.2
(-2.9) 		184.8
(-2.8) 		223.6
(1.4) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173393_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27798
Sequence Type Exemplar sequence
Representative Public ID AV199436 NCBI
Target Description AV199436_rc /REP_DB=TREMBL Accession /GB=AV199436 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk546a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060806 NCBI Caenorhabditis elegans T26E3.4 (T26E3.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000034760 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12672387:12676855:1 11/11 None
SNAP00000034748 ENSEMBL cdna:SNAP chromosome:CEL140:I:12673241:12682166:1 9/11 None
T26E3.4 ENSEMBL cdna:known chromosome:CEL140:I:12673236:12676949:1 gene:T26E3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12675231-12676861(+) 93.4 93.4
Public Domain and Genome References
Gene Title
Ensembl T26E3.4
Entrez Gene 173136 Entrez gene
SwissProt O18131 EMBL-EBI
WormBase CE24015 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256173_AT RWD domain-containing protein at
CANINE:1603638_AT similar to small androgen receptor-interacting protein cfa
CANINE_2:CFA.13092.1.S1_S_AT similar to small androgen receptor-interacting protein cfa
DROSGENOME1:153757_AT dm
DROSOPHILA_2:1634168_S_AT dm
CHICKEN:GGAAFFX.12766.1.S1_AT RWD domain containing 1 gga
CHICKEN:GGAAFFX.9501.1.S1_AT RWD domain containing 1 gga
HG-U133_PLUS_2:219598_S_AT RWD domain containing 1 hs
HG-U133A:219598_S_AT RWD domain containing 1 hs
HG-U133A_2:219598_S_AT RWD domain containing 1 hs
HU35KSUBA:RC_AA460444_AT RWD domain containing 1 hs
U133_X3P:G7706668_3P_S_AT RWD domain containing 1 hs
HG-U95C:63839_AT RWD domain containing 1 hs
MOE430B:1454241_AT RWD domain containing 1 mm
MOUSE430_2:1454241_AT RWD domain containing 1 mm
MG-U74AV2:160299_AT RWD domain containing 1 mm
MOE430A:1427913_AT RWD domain containing 1 mm
MOUSE430A_2:1427913_AT RWD domain containing 1 mm
MOUSE430_2:1427913_AT RWD domain containing 1 mm
MOE430B:1430242_AT RWD domain containing 1 mm
MOUSE430_2:1430242_AT RWD domain containing 1 mm
MU19KSUBC:TC35416_S_AT RWD domain containing 1 (Rwdd1), mRNA mm
YEAST_2:1777979_AT Highly-acidic cytoplasmic RWD domain-containing protein of unknown function, sensitive to proteolysis, N-terminal region has high content of acidic amino acid residues, putative IUP (intrinsically unstructured protein) Sc
Protein Similarities
Method ID Description E-Value
blast CAB61018 Hypothetical protein T26E3.3 [Caenorhabditis elegans] ref|NP_493208.1| abnormal embryonic PARtitioning of cytoplasm family member (par-6) [Caenorhabditis elegans] sp|Q9NAN2|PAR6_CAEEL Partitioning defective 6 protein gb|AAD15926.1| PAR-6 [Caenorhabditis elegans] 1.0E-172
blast T25297 hypothetical protein T26E3.3 - Caenorhabditis elegans 1.0E-166
blast CAE64104 Hypothetical protein CBG08713 [Caenorhabditis briggsae] 1.0E-151
blast CAB04837 Hypothetical protein T26E3.4 [Caenorhabditis elegans] ref|NP_493207.1| T26E3.4 [Caenorhabditis elegans] 2.0E-95
blast CAB04837 Hypothetical protein T26E3.4 [Caenorhabditis elegans] ref|NP_493207.1| T26E3.4 [Caenorhabditis elegans] 4.0E-95
blast CAE64105 Hypothetical protein CBG08714 [Caenorhabditis briggsae] 1.0E-82
blast CAE64105 Hypothetical protein CBG08714 [Caenorhabditis briggsae] 2.0E-82
blast XP_393179 PREDICTED: similar to ENSANGP00000020330 [Apis mellifera] 2.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR006575 EMBL-EBI RWD 1.9E-33
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.4E-7
Pfam IPR000270 EMBL-EBI Octicosapeptide/Phox/Bem1p 1.2E-16
Pfam IPR006575 EMBL-EBI RWD 1.9E-33
Sequence
Target Sequence 
>C. ELEGANS:173393_S_AT
acgattggcatcgttggctggacgattaacaggacgtcaactattccttcgtgacgctac
actcaatctctctgacgtcacacttattggagcacaagatgaagtcgaaattgatgagag
cctctttgataatgaggaactcgaaggtcttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGATTGGCATCGTTGGCTGGACGA 537 93 29 Antisense
GTTGGCTGGACGATTAACAGGACGT 494 431 41 Antisense
AACAGGACGTCAACTATTCCTTCGT 395 135 56 Antisense
AGGACGTCAACTATTCCTTCGTGAC 496 53 59 Antisense
GTCAACTATTCCTTCGTGACGCTAC 175 465 64 Antisense
TCTCTCTGACGTCACACTTATTGGA 181 613 95 Antisense
CTGACGTCACACTTATTGGAGCACA 489 237 100 Antisense
GTCACACTTATTGGAGCACAAGATG 236 465 105 Antisense
GAAGTCGAAATTGATGAGAGCCTCT 485 335 129 Antisense
GAGAGCCTCTTTGATAATGAGGAAC 447 393 144 Antisense
TAATGAGGAACTCGAAGGTCTTGAA 164 635 158 Antisense
Sequence Source Affymetrix Proprietary Database