[Home] | [Total List]

[173391_s_at] NADH-ubiquinone oxidoreductase 49KD subunit

Description AV177682_rc /REP_DB=TREMBL Accession /GB=AV177682 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk532b10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 24      6grp_total > 22      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2054
1 2 3 4 range
A 4134.3
(3)
P 		3062.9
(-0.2)
P 		4136.7
(3)
P 		2098.2
(-3)
P 		2039
B 3915.5
(3)
P 		3465.6
(1.5)
P 		3921.1
(3)
P 		2097.8
(-3)
P 		1823
C 3281.6
(0.8)
P 		3954.6
(3)
P 		3786.8
(2.5)
P 		2083.2
(-3)
P 		1871
avr 3777.1
(2.4) 		3494.4
(1.5) 		3948.2
(3) 		2093.1
(-3) 		1855

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1938
1 2 3 4 5 6 range
A 3264.7
(1)
P 		3723.7
(2.7)
P 		3800.4
(3)
P 		3569.8
(2.2)
P 		2505.9
(-1.8)
P 		2165.7
(-3)
P 		1635
B 3257.4
(1.4)
P 		3592.3
(3)
P 		2891.6
(-0.4)
P 		3446.6
(2.3)
P 		2905.1
(-0.3)
P 		2351.5
(-3)
P 		1241
C 3624.3
(2.6)
P 		3560
(2.4)
P 		3745.3
(3)
P 		2860.2
(0.2)
P 		2787.8
(-0.1)
P 		1862.5
(-3)
P 		1883
avr 3382.1
(2) 		3625.3
(3) 		3479.1
(2.4) 		3292.2
(1.7) 		2732.9
(-0.6) 		2126.6
(-3) 		1499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1198
1 2 3 4 range
A 1505.3
(3)
P 		664.9
(-1.2)
P 		1081.4
(0.9)
P 		307.1
(-3)
P 		1198
B 1248.6
(3)
P 		855.9
(0.1)
P 		908.6
(0.5)
P 		447
(-3)
P 		802
C 1086.3
(1.6)
P 		1137
(1.9)
P 		1319.8
(3)
P 		351.3
(-3)
P 		969
avr 1280.1
(3) 		885.9
(0.4) 		1103.3
(1.8) 		368.5
(-3) 		912

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 816
1 2 3 4 5 6 range
A 601.8
(-2.4)
P 		1324.3
(3)
P 		827.6
(-0.7)
P 		905.4
(-0.2)
P 		756.2
(-1.3)
P 		527.3
(-3)
P 		797
B 1133.4
(2.2)
P 		1195.7
(3)
P 		702.2
(-3)
P 		912.9
(-0.4)
P 		1180.3
(2.8)
P 		876.9
(-0.9)
P 		494
C 1343.4
(3)
P 		1086.3
(1)
P 		953.3
(-0)
P 		575.2
(-3)
P 		902.1
(-0.4)
P 		623.5
(-2.6)
P 		768
avr 1026.2
(1) 		1202.1
(3) 		827.7
(-1.3) 		797.8
(-1.6) 		946.2
(0.1) 		675.9
(-3) 		526
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173391_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28022
Sequence Type Exemplar sequence
Representative Public ID AV177682 NCBI
Target Description AV177682_rc /REP_DB=TREMBL Accession /GB=AV177682 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk532b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078168 NCBI Caenorhabditis elegans General Anaesthetic Sensitivity abnormal family member (gas-1) (gas-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000037626 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15586937:15590309:-1 10/11 None
K09A9.5.1 ENSEMBL cdna:known chromosome:CEL140:X:15586731:15590315:-1 gene:K09A9.5 11/11 None
K09A9.5.2 ENSEMBL cdna:known chromosome:CEL140:X:15586731:15590317:-1 gene:K09A9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037620 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15586857-15587068(-) 66.88 66.88
Public Domain and Genome References
Gene Title NADH-ubiquinone oxidoreductase 49KD subunit
Gene Symbol gas-1
Ensembl K09A9.5
Entrez Gene 181646 Entrez gene
SwissProt Q93873 EMBL-EBI
WormBase CE11980 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1630695_AT dm
DROSGENOME1:150980_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01886 Hypothetical protein K09A9.5 [Caenorhabditis elegans] ref|NP_510569.1| General Anaesthetic Sensitivity abnormal family member (gas-1) [Caenorhabditis elegans] sp|Q93873|NUCM_CAEEL Probable NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial precursor (Complex I-49KD) (CI-49KD) 0.0
blast CAE63330 Hypothetical protein CBG07730 [Caenorhabditis briggsae] 0.0
blast NP_498423 Temporarily Assigned Gene name family member (tag-99) [Caenorhabditis elegans] gb|AAC77506.1| Temporarily assigned gene name protein 99 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001135 EMBL-EBI NADH-ubiquinone oxidoreductase, chain 49kDa 1.0E-126
Pfam IPR001135 EMBL-EBI NADH-ubiquinone oxidoreductase, chain 49kDa 1.0E-126
Pfam IPR001135 EMBL-EBI NADH-ubiquinone oxidoreductase, chain 49kDa 1.2E-20
Sequence
Target Sequence 
>C. ELEGANS:173391_S_AT
ttggagtttaccttgttgctgatggaaccggaaaaccatatagatgcttcatccgcgctc
cagggtttgctcacttggcggccatccacgatgtgtgatacatgtctcttatcgccgaca
ttgtcgctgtcattggaactatggatattgtgttcggagaggtcgatcgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAGTTTACCTTGTTGCTGATGG 504 699 13 Antisense
TACCTTGTTGCTGATGGAACCGGAA 550 645 21 Antisense
GGAACCGGAAAACCATATAGATGCT 89 529 36 Antisense
CCATATAGATGCTTCATCCGCGCTC 200 271 48 Antisense
TACATGTCTCTTATCGCCGACATTG 467 643 111 Antisense
TCTCTTATCGCCGACATTGTCGCTG 329 613 117 Antisense
TTATCGCCGACATTGTCGCTGTCAT 204 681 121 Antisense
CGCCGACATTGTCGCTGTCATTGGA 489 255 125 Antisense
ACATTGTCGCTGTCATTGGAACTAT 145 105 130 Antisense
ACTATGGATATTGTGTTCGGAGAGG 596 99 150 Antisense
TTGTGTTCGGAGAGGTCGATCGATA 580 703 160 Antisense
Sequence Source Affymetrix Proprietary Database