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[173383_s_at]

Description AU115343_rc /REP_DB=TREMBL Accession /GB=AU115343 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk730h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 96      6grp_total > 79      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3973
1 2 3 4 range
A 852.9
(-2.5)
P 		553.3
(-3)
P 		715.1
(-2.7)
P 		4353.3
(3)
P 		3800
B 806.3
(-2.6)
P 		544.6
(-3)
P 		614.3
(-2.9)
P 		4517.2
(3)
P 		3973
C 1007
(-2.4)
P 		678.4
(-3)
P 		717.2
(-2.9)
P 		3809.4
(3)
P 		3131
avr 888.7
(-2.5) 		592.1
(-3) 		682.2
(-2.9) 		4226.6
(3) 		3635

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1090
1 2 3 4 5 6 range
A 565.8
(-2.9)
P 		617.1
(-2.1)
P 		559.2
(-3)
P 		641.4
(-1.7)
P 		824.5
(1)
P 		953.2
(3)
P 		394
B 712.9
(-2.3)
P 		836.4
(-1.5)
P 		727.2
(-2.2)
P 		607.5
(-3)
P 		1012.2
(-0.4)
P 		1541.8
(3)
P 		934
C 707.3
(-1.6)
P 		726.2
(-1.5)
P 		452.3
(-3)
P 		609.1
(-2.1)
P 		887.2
(-0.5)
P 		1515.6
(3)
P 		1063
avr 662
(-2.3) 		726.6
(-1.8) 		579.6
(-3) 		619.3
(-2.7) 		908
(-0.4) 		1336.9
(3) 		757
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 843
1 2 3 4 range
A 310.6
(-0.8)
P 		120.1
(-3)
P 		186.9
(-2.2)
P 		637.2
(3)
P 		517
B 257.1
(-2.1)
P 		134.5
(-3)
P 		142.3
(-2.9)
P 		962.6
(3)
P 		828
C 333.3
(-1.1)
P 		195
(-3)
P 		250
(-2.3)
P 		642.3
(3)
P 		447
avr 300.3
(-1.5) 		149.9
(-3) 		193.1
(-2.6) 		747.4
(3) 		598

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 471
1 2 3 4 5 6 range
A 104.3
(-3)
P 		219.5
(1.8)
P 		121.8
(-2.3)
P 		162.7
(-0.6)
P 		248.8
(3)
P 		232.1
(2.3)
P 		145
B 248.1
(-1.7)
P 		278.4
(-1.3)
P 		176.6
(-2.8)
P 		160.9
(-3)
P 		411.3
(0.6)
P 		574.9
(3)
P 		414
C 262.2
(-0.8)
P 		221.6
(-1.4)
P 		115.1
(-3)
P 		122.5
(-2.9)
P 		287.1
(-0.4)
P 		507.4
(3)
P 		392
avr 204.9
(-1.7) 		239.8
(-1) 		137.8
(-3) 		148.7
(-2.8) 		315.7
(0.6) 		438.1
(3) 		300
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173383_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27927
Sequence Type Exemplar sequence
Representative Public ID AU115343 NCBI
Target Description AU115343_rc /REP_DB=TREMBL Accession /GB=AU115343 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk730h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027120(11), NM_001027121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027120 NCBI Caenorhabditis elegans T01B7.5a (T01B7.5) mRNA, complete cds. 11/11 None
NM_001027121 NCBI Caenorhabditis elegans T01B7.5b (T01B7.5) mRNA, complete cds. 11/11 None
SNAP00000025606 ENSEMBL cdna:SNAP chromosome:CEL140:II:8718473:8719999:1 11/11 None
GENEFINDER00000025630 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8716768:8719999:1 11/11 None
T01B7.5 ENSEMBL cdna:known chromosome:CEL140:II:8716768:8721614:1 gene:T01B7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8719061-8721542(+) 90.52 90.52
Public Domain and Genome References
Ensembl T01B7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91298 Hypothetical protein T01B7.5a [Caenorhabditis elegans] ref|NP_001022291.1| T01B7.5a [Caenorhabditis elegans] 1.0E-167
blast CAA91298 Hypothetical protein T01B7.5a [Caenorhabditis elegans] ref|NP_001022291.1| T01B7.5a [Caenorhabditis elegans] 1.0E-161
blast CAE59724 Hypothetical protein CBG03160 [Caenorhabditis briggsae] 1.0E-142
blast CAE59724 Hypothetical protein CBG03160 [Caenorhabditis briggsae] 1.0E-136
blast CAI70408 Hypothetical protein T01B7.5b [Caenorhabditis elegans] ref|NP_001022292.1| T01B7.5b [Caenorhabditis elegans] 3.0E-91
blast CAA91298 Hypothetical protein T01B7.5a [Caenorhabditis elegans] ref|NP_001022291.1| T01B7.5a [Caenorhabditis elegans] 3.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR007146 EMBL-EBI Sas10/Utp3 9.6E-79
Pfam IPR007146 EMBL-EBI Sas10/Utp3 2.9E-59
Pfam IPR007146 EMBL-EBI Sas10/Utp3 1.2E-5
Pfam IPR007146 EMBL-EBI Sas10/Utp3 2.9E-59
Pfam IPR007146 EMBL-EBI Sas10/Utp3 1.0E-40
Pfam IPR007146 EMBL-EBI Sas10/Utp3 1.5E-23
Pfam IPR007146 EMBL-EBI Sas10/Utp3 2.9E-59
Sequence
Target Sequence 
>C. ELEGANS:173383_S_AT
tccacgccatcgagaagcgcgtcaagtctcagattggaaacgttcgtcgcgaaatgcaga
aatattctggagaaacgagcggaattcgtgcatctacaatcaagtcgactaagcttatcg
ctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACGCCATCGAGAAGCGCGTCAA 468 589 77 Antisense
GCCATCGAGAAGCGCGTCAAGTCTC 505 281 82 Antisense
GAAGCGCGTCAAGTCTCAGATTGGA 34 345 90 Antisense
GTCTCAGATTGGAAACGTTCGTCGC 569 469 102 Antisense
GGAAACGTTCGTCGCGAAATGCAGA 568 527 112 Antisense
GTTCGTCGCGAAATGCAGAAATATT 324 443 118 Antisense
ATATTCTGGAGAAACGAGCGGAATT 642 17 138 Antisense
GAGCGGAATTCGTGCATCTACAATC 209 387 153 Antisense
GAATTCGTGCATCTACAATCAAGTC 146 323 158 Antisense
GTGCATCTACAATCAAGTCGACTAA 14 481 164 Antisense
ATCAAGTCGACTAAGCTTATCGCTT 261 27 175 Antisense
Sequence Source Affymetrix Proprietary Database