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[173382_s_at] T-complex protein

Description AU115047_rc /REP_DB=TREMBL Accession /GB=AU115047 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk725b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 03      6grp_total > 26      4grp_total > 24      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4024
1 2 3 4 range
A 3585.6
(-3)
P 		5039.5
(0.2)
P 		5338
(0.8)
P 		6349
(3)
P 		2763
B 3274.4
(-3)
P 		4469.9
(-1.2)
P 		5109.5
(-0.2)
P 		7153.6
(3)
P 		3879
C 3129.4
(-3)
P 		4334.4
(-0.8)
P 		4816.7
(0.1)
P 		6378.2
(3)
P 		3249
avr 3329.8
(-3) 		4614.6
(-0.7) 		5088.1
(0.2) 		6626.9
(3) 		3297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2618
1 2 3 4 5 6 range
A 4656.5
(3)
P 		3361.4
(0)
P 		2773.5
(-1.3)
P 		2038.9
(-3)
P 		2355.7
(-2.3)
P 		2547.9
(-1.8)
P 		2618
B 4225.6
(3)
P 		3994.9
(2.3)
P 		3180
(-0.2)
P 		2237.9
(-3)
P 		2700.7
(-1.6)
P 		3119.1
(-0.3)
P 		1988
C 3535
(3)
P 		3467.7
(2.6)
P 		2425.3
(-2.9)
P 		2538.6
(-2.3)
P 		2404.9
(-3)
P 		3121.8
(0.8)
P 		1130
avr 4139
(3) 		3608
(1.3) 		2792.9
(-1.3) 		2271.8
(-3) 		2487.1
(-2.3) 		2929.6
(-0.9) 		1867
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 749
1 2 3 4 range
A 1305.5
(1.8)
P 		1093.9
(-0.9)
P 		1395.5
(3)
P 		929.4
(-3)
P 		466
B 1044.2
(-3)
P 		1104
(-2.3)
P 		1184
(-1.3)
P 		1524.4
(3)
P 		480
C 1035.9
(-3)
P 		1246.2
(-1)
P 		1678.8
(3)
P 		1075.5
(-2.6)
P 		643
avr 1128.5
(-3) 		1148
(-2.6) 		1419.4
(3) 		1176.4
(-2) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 960
1 2 3 4 5 6 range
A 858.4
(0)
P 		1195.5
(3)
P 		604
(-2.2)
P 		517.1
(-3)
P 		710.8
(-1.3)
P 		620.3
(-2.1)
P 		678
B 1470.3
(3)
P 		1329.7
(2)
P 		772.2
(-1.8)
P 		592.7
(-3)
P 		1097.3
(0.4)
P 		1163.1
(0.9)
P 		878
C 1310.3
(3)
P 		1058.1
(1.1)
P 		617.3
(-2.2)
P 		510.5
(-3)
P 		778.2
(-1)
P 		1045
(1)
P 		800
avr 1213
(3) 		1194.4
(2.8) 		664.5
(-1.9) 		540.1
(-3) 		862.1
(-0.1) 		942.8
(0.6) 		673
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173382_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27887
Sequence Type Exemplar sequence
Representative Public ID AU115047 NCBI
Target Description AU115047_rc /REP_DB=TREMBL Accession /GB=AU115047 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk725b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063321 NCBI Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-1) (cct-1) mRNA, complete cds. 11/11 A 
SNAP00000002114 ENSEMBL cdna:SNAP chromosome:CEL140:II:8185367:8187308:1 11/11 None
GENEFINDER00000002124 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8185367:8187308:1 11/11 None
T05C12.7.4 ENSEMBL cdna:known chromosome:CEL140:II:8185357:8187516:1 gene:T05C12.7 11/11 None
T05C12.7.3 ENSEMBL cdna:known chromosome:CEL140:II:8185359:8187516:1 gene:T05C12.7 11/11 A 
T05C12.7.2 ENSEMBL cdna:known chromosome:CEL140:II:8185360:8187524:1 gene:T05C12.7 11/11 A 
T05C12.7.1 ENSEMBL cdna:known chromosome:CEL140:II:8185364:8187524:1 gene:T05C12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8187164-8187401(+) 78.48 78.48
Public Domain and Genome References
Gene Title T-complex protein
Gene Symbol cct-1
Ensembl T05C12.7
Entrez Gene 174318 Entrez gene
SwissProt P41988 EMBL-EBI
WormBase CE02319 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257125_AT T-complex protein 1 alpha subunit / TCP-1-alpha / chaperonin (CCT1) at
CANINE:1583327_AT similar to T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) cfa
CANINE_2:CFA.21272.1.S1_S_AT similar to T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) cfa
CANINE_2:CFA.21272.2.S1_AT similar to T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) cfa
CANINE_2:CFA.970.1.S1_S_AT similar to T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) cfa
DROSOPHILA_2:1627638_S_AT Tcp1-like dm
DROSGENOME1:143374_AT Tcp1-like dm
CHICKEN:GGA.5262.1.S1_S_AT t-complex 1 gga
HG-U95AV2:34791_AT t-complex 1 hs
HUGENEFL:X52882_AT t-complex 1 hs
HG-U133A:208778_S_AT t-complex 1 hs
HG-U133_PLUS_2:208778_S_AT t-complex 1 hs
HG-U133A_2:208778_S_AT t-complex 1 hs
U133_X3P:G12653758_3P_S_AT t-complex 1 hs
U133_X3P:HS.278544.2.A1_3P_S_AT t-complex 1 hs
HG-U133A_2:222010_AT t-complex 1 hs
HG-U133_PLUS_2:222010_AT t-complex 1 hs
HG-U133A:222010_AT t-complex 1 hs
HG-U133A_2:222011_S_AT t-complex 1 hs
HG-FOCUS:222011_S_AT t-complex 1 hs
HG-U133_PLUS_2:222011_S_AT t-complex 1 hs
HG-U133A:222011_S_AT t-complex 1 hs
MOE430A:1448122_AT t-complex protein 1 mm
MOUSE430_2:1448122_AT t-complex protein 1 mm
MOUSE430A_2:1448122_AT t-complex protein 1 mm
MU11KSUBA:D90344_S_AT t-complex protein 1 mm
MG-U74AV2:94218_AT t-complex protein 1 mm
MG-U74AV2:162443_AT t-complex protein 1 mm
MU19KSUBA:TC19010_AT T-complex protein 1, mRNA (cDNA clone MGC:6094 IMAGE:3599670) mm
MU19KSUBA:TC24361_AT T-complex protein 1, mRNA (cDNA clone MGC:6094 IMAGE:3599670) mm
MU19KSUBC:TC39454_AT T-complex protein 1, mRNA (cDNA clone MGC:6094 IMAGE:3599670) mm
MU19KSUBC:TC39454_G_AT T-complex protein 1, mRNA (cDNA clone MGC:6094 IMAGE:3599670) mm
RG-U34A:RC_AA875054_AT t-complex protein 1 rn
RAE230A:1368049_AT t-complex protein 1 rn
RAT230_2:1368049_AT t-complex protein 1 rn
YEAST_2:1779318_AT Alpha subunit of chaperonin-containing T-complex, which mediates protein folding in the cytosol; involved in maintenance of actin cytoskeleton; homolog to Drosophila melanogaster and mouse tailless complex polypeptide Sc
Protein Similarities
Method ID Description E-Value
blast CAA91308 Hypothetical protein T05C12.7 [Caenorhabditis elegans] ref|NP_495722.1| Chaperonin Containing TCP-1 family member (cct-1) [Caenorhabditis elegans] 0.0
blast P41988 T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) gb|AAB05072.1| CCT-1 0.0
blast CAE57713 Hypothetical protein CBG00721 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173382_S_AT
ctggaattttggagccagctcttagtaaggtcaagtctctgaagttcgccactgaggcag
ccattacgatattgcgtattgatgacctcatcaaacttgacaagcaagagccacttggag
gagatgattgccacgcttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGAATTTTGGAGCCAGCTCTTAG 94 241 14 Antisense
GGAGCCAGCTCTTAGTAAGGTCAAG 526 521 24 Antisense
AGGTCAAGTCTCTGAAGTTCGCCAC 508 57 41 Antisense
GTCTCTGAAGTTCGCCACTGAGGCA 319 471 48 Antisense
AAGTTCGCCACTGAGGCAGCCATTA 280 157 55 Antisense
TGAGGCAGCCATTACGATATTGCGT 7 567 66 Antisense
GATATTGCGTATTGATGACCTCATC 489 427 81 Antisense
GATGACCTCATCAAACTTGACAAGC 390 409 94 Antisense
AACTTGACAAGCAAGAGCCACTTGG 12 139 107 Antisense
GAGCCACTTGGAGGAGATGATTGCC 410 385 121 Antisense
TGGAGGAGATGATTGCCACGCTTAA 22 551 129 Antisense
Sequence Source Affymetrix Proprietary Database