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[173381_at]

Description AU115047_rc /REP_DB=TREMBL Accession /GB=AU115047 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk725b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 03      6grp_total > 16      4grp_total > 32      6grp_highest_sub > De      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2911
1 2 3 4 range
A 3582.1
(-3)
P 		4178.2
(-1.5)
P 		5914.2
(3)
P 		5097
(0.9)
P 		2332
B 3017.4
(-3)
P 		4749.3
(0.6)
P 		5387.8
(1.9)
P 		5928
(3)
P 		2911
C 3510.1
(-3)
P 		4963.4
(1.7)
P 		5351.9
(3)
P 		4489.8
(0.2)
P 		1842
avr 3369.9
(-3) 		4630.3
(0.5) 		5551.3
(3) 		5171.6
(2) 		2181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2432
1 2 3 4 5 6 range
A 3318.2
(3)
P 		3081.1
(2)
P 		2129.8
(-1.8)
P 		1834.1
(-3)
P 		2455.7
(-0.5)
P 		2176
(-1.6)
P 		1484
B 4266
(3)
P 		3344.6
(0.3)
P 		3015.9
(-0.7)
P 		2693.7
(-1.6)
P 		2213.1
(-3)
P 		2667.8
(-1.7)
P 		2053
C 3596.1
(3)
P 		3174
(1.1)
P 		2316.3
(-2.8)
P 		2273.3
(-3)
P 		2277.4
(-3)
P 		2864.3
(-0.3)
P 		1323
avr 3726.8
(3) 		3199.9
(0.8) 		2487.3
(-2.1) 		2267
(-3) 		2315.4
(-2.8) 		2569.4
(-1.8) 		1460
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1119
1 2 3 4 range
A 1304.2
(1.2)
P 		907
(-1.8)
P 		1546.1
(3)
P 		746.1
(-3)
P 		800
B 962.2
(-3)
P 		1173
(1.2)
P 		1248.5
(2.7)
P 		1263.3
(3)
P 		301
C 1162
(-0.8)
P 		1427
(0.6)
P 		1865.3
(3)
P 		757
(-3)
P 		1108
avr 1142.8
(-0.9) 		1169
(-0.7) 		1553.3
(3) 		922.1
(-3) 		631

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1027
1 2 3 4 5 6 range
A 611.7
(-1.6)
P 		1095.8
(3)
P 		463.8
(-3)
P 		465.2
(-3)
P 		741
(-0.4)
P 		529.8
(-2.4)
P 		632
B 1484.3
(3)
P 		1113.3
(0.1)
P 		732.3
(-2.9)
P 		713.5
(-3)
P 		899.1
(-1.6)
P 		994.8
(-0.8)
P 		771
C 1332.9
(3)
P 		968.5
(0.5)
P 		589.6
(-2.1)
P 		457.2
(-3)
P 		736.9
(-1.1)
P 		958.9
(0.4)
P 		876
avr 1143
(3) 		1059.2
(2.2) 		595.2
(-2.5) 		545.3
(-3) 		792.3
(-0.5) 		827.8
(-0.2) 		598
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27887
Sequence Type Exemplar sequence
Representative Public ID AU115047 NCBI
Target Description AU115047_rc /REP_DB=TREMBL Accession /GB=AU115047 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk725b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU115047
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU115047 AU115047_rc /REP_DB=TREMBL Accession /GB=AU115047 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk725b8 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063321 8/11 Cross Hyb Matching Probes None
T05C12.7.4 8/11 Cross Hyb Matching Probes None
T05C12.7.3 8/11 Cross Hyb Matching Probes A 
T05C12.7.2 8/11 Cross Hyb Matching Probes A 
T05C12.7.1 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8187164-8187401(+) 78.48 78.48
Sequence
Target Sequence 
>C. ELEGANS:173381_AT
gattgccacgcttaaattttcccgtttaccccgtttatatatccctgttttccgcgtgct
tctcacataattccgatctgctgctccttatcccaaattctcatgttcagcgcgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGCCACGCTTAAATTTTCCCGT 688 431 139 Antisense
CGTTTATATATCCCTGTTTTCCGCG 442 247 170 Antisense
CGCGTGCTTCTCACATAATTCCGAT 644 255 191 Antisense
GCGTGCTTCTCACATAATTCCGATC 704 291 192 Antisense
GCTTCTCACATAATTCCGATCTGCT 675 305 196 Antisense
TCTCACATAATTCCGATCTGCTGCT 535 613 199 Antisense
CTCCTTATCCCAAATTCTCATGTTC 598 235 222 Antisense
CCTTATCCCAAATTCTCATGTTCAG 232 269 224 Antisense
TATCCCAAATTCTCATGTTCAGCGC 656 657 227 Antisense
TCCCAAATTCTCATGTTCAGCGCGA 6 599 229 Antisense
CCAAATTCTCATGTTCAGCGCGATG 36 277 231 Antisense
Sequence Source Affymetrix Proprietary Database