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[173379_s_at] S.pombe hypothetical protein C1D4.09C like

Description AU113970_rc /REP_DB=TREMBL Accession /GB=AU113970 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk713f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 85      6grp_total > 65      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 854
1 2 3 4 range
A 657.2
(-1.3)
P 		497.5
(-3)
P 		707.4
(-0.8)
P 		1072.9
(3)
P 		575
B 687.2
(-0.7)
P 		406.7
(-3)
P 		494.9
(-2.3)
P 		1131.8
(3)
P 		725
C 801.3
(-0.4)
P 		565.1
(-2.1)
P 		448.1
(-3)
P 		1261.1
(3)
P 		813
avr 715.2
(-1) 		489.8
(-3) 		550.1
(-2.5) 		1155.3
(3) 		666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 748
1 2 3 4 5 6 range
A 663.1
(-2.1)
P 		554.7
(-3)
P 		1246.9
(3)
P 		777.7
(-1.1)
P 		828.4
(-0.6)
P 		761.3
(-1.2)
P 		692
B 568.1
(-3)
P 		798.7
(-0.4)
P 		1103.2
(3)
P 		683.8
(-1.7)
P 		828.9
(-0.1)
P 		1058.7
(2.5)
P 		535
C 555.7
(-2.5)
P 		576.2
(-2.3)
P 		642.3
(-1.8)
P 		771.7
(-0.7)
P 		499.2
(-3)
P 		1202.2
(3)
P 		703
avr 595.6
(-3) 		643.2
(-2.3) 		997.5
(2.9) 		744.4
(-0.8) 		718.8
(-1.2) 		1007.4
(3) 		412
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 239.3
(3)
P 		108
(-3)
P 		184.9
(0.5)
P 		157.1
(-0.8)
P 		131
B 219.1
(2.1)
P 		100.4
(-3)
P 		114.7
(-2.4)
P 		241.2
(3)
P 		141
C 265.3
(3)
P 		162.5
(-2.7)
P 		156.2
(-3)
P 		212.6
(0.1)
P 		109
avr 241.2
(3) 		123.6
(-3) 		151.9
(-1.6) 		203.6
(1.1) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 122.2
(-3)
P 		197.3
(0)
P 		271.5
(3)
P 		197.2
(0)
P 		250
(2.1)
P 		185.4
(-0.5)
P 		149
B 197.7
(-2.5)
P 		265.9
(-0.6)
P 		267.9
(-0.6)
P 		181.1
(-3)
P 		336.8
(1.4)
P 		394.8
(3)
P 		214
C 206
(-1.8)
P 		175.8
(-2.5)
P 		163.5
(-2.8)
P 		155.2
(-3)
P 		161.5
(-2.8)
P 		402.4
(3)
P 		247
avr 175.3
(-3) 		213
(-1.5) 		234.3
(-0.7) 		177.8
(-2.9) 		249.4
(-0.1) 		327.5
(3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173379_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27688
Sequence Type Exemplar sequence
Representative Public ID AU113970 NCBI
Target Description AU113970_rc /REP_DB=TREMBL Accession /GB=AU113970 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk713f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060954 NCBI Caenorhabditis elegans C01A2.5 (C01A2.5) mRNA, complete cds. 11/11 A 
SNAP00000025716 ENSEMBL cdna:SNAP chromosome:CEL140:I:13392953:13395070:1 11/11 None
GENEFINDER00000025744 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13392953:13395070:1 11/11 None
C01A2.5 ENSEMBL cdna:known chromosome:CEL140:I:13392882:13395203:1 gene:C01A2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13393791-13395059(+) 97.05 97.05
Public Domain and Genome References
Gene Title S.pombe hypothetical protein C1D4.09C like
Ensembl C01A2.5
Entrez Gene 173206 Entrez gene
SwissProt O02209 EMBL-EBI
WormBase CE07787 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247840_AT expressed protein at
CANINE:1583562_S_AT similar to Protein C20orf43 cfa
CANINE:1583561_AT similar to Protein C20orf43 cfa
CANINE_2:CFA.4613.1.A1_AT similar to Protein C20orf43 cfa
CANINE_2:CFAAFFX.18566.1.S1_AT similar to Protein C20orf43 cfa
CANINE_2:CFAAFFX.18566.1.S1_S_AT similar to Protein C20orf43 cfa
DROSOPHILA_2:1641336_AT dm
DROSGENOME1:142869_AT dm
CHICKEN:GGA.4506.1.A1_AT similar to Protein C20orf43 (HSPC164/HSPC169) (AD-007) (CDA05) gga
CHICKEN:GGAAFFX.12506.1.S1_AT similar to Protein C20orf43 (HSPC164/HSPC169) (AD-007) (CDA05) gga
HG-U133_PLUS_2:217737_X_AT chromosome 20 open reading frame 43 hs
HG-U133A:217737_X_AT chromosome 20 open reading frame 43 hs
HG-U133A_2:217737_X_AT chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:234926_S_AT chromosome 20 open reading frame 43 hs
HG-U133B:234926_S_AT chromosome 20 open reading frame 43 hs
HG-U133B:224128_AT chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:224128_AT chromosome 20 open reading frame 43 hs
HU35KSUBA:RC_AA411829_AT chromosome 20 open reading frame 43 hs
HU35KSUBA:AA313653_AT chromosome 20 open reading frame 43 hs
U133_X3P:G12803852_3P_AT chromosome 20 open reading frame 43 hs
U133_X3P:HS.182281.2.A1_3P_A_AT chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:233842_X_AT chromosome 20 open reading frame 43 hs
HG-U133B:233842_X_AT chromosome 20 open reading frame 43 hs
HG-U95B:45259_AT chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:234540_AT Chromosome 20 open reading frame 43 hs
HG-U133B:234540_AT Chromosome 20 open reading frame 43 hs
U133_X3P:HS.287760.0.S1_3P_AT Chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:236702_AT Chromosome 20 open reading frame 43 hs
HG-U133B:236702_AT Chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:242040_AT Chromosome 20 open reading frame 43 hs
HG-U133B:242040_AT Chromosome 20 open reading frame 43 hs
HG-U95B:56709_AT Chromosome 20 open reading frame 43 hs
HG-U95E:69731_AT Chromosome 20 open reading frame 43 hs
U133_X3P:HS.93761.0.A1_3P_AT Chromosome 20 open reading frame 43 hs
HU35KSUBC:RC_N32877_AT Chromosome 20 open reading frame 43 hs
U133_X3P:HS.201076.0.A1_3P_AT Chromosome 20 open reading frame 43 hs
MG-U74AV2:95501_AT RIKEN cDNA 2410001C21 gene mm
MOE430A:1460362_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430A_2:1460362_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430_2:1460362_AT RIKEN cDNA 2410001C21 gene mm
MOE430A:1424564_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430A_2:1424564_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430_2:1424564_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430_2:1446314_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MOE430B:1446314_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MG-U74BV2:164727_R_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MU19KSUBB:TC33974_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MU19KSUBB:TC33974_G_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MU19KSUBB:TC34765_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MU19KSUBC:TC35584_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
Protein Similarities
Method ID Description E-Value
blast CAB02700 Hypothetical protein C01A2.5 [Caenorhabditis elegans] ref|NP_493355.1| C01A2.5 [Caenorhabditis elegans] 1.0E-125
blast CAE73030 Hypothetical protein CBG20397 [Caenorhabditis briggsae] 1.0E-109
blast XP_392777 PREDICTED: similar to ENSANGP00000006158 [Apis mellifera] 1.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR006735 EMBL-EBI Protein of unknown function DUF602 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173379_S_AT
ctccagggccaagtggctccggagttggaaagcatgtggatctcaaggaagagctggaaa
tcgcaaagctcaccggtggctcgacatcagaaaagaaagctggaaaacgaaaagcaaata
cggatattcaatcggatcctaccacttcagacacttataagaagctgtttacaacatgtg
aagctgcnnnaaataagactgaaggacattgggtcacttataatccactttatta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAGGGCCAAGTGGCTCCGGAGT 154 229 16 Antisense
AAGTGGCTCCGGAGTTGGAAAGCAT 392 157 26 Antisense
CTGGAAATCGCAAAGCTCACCGGTG 435 241 69 Antisense
ACCGGTGGCTCGACATCAGAAAAGA 167 89 87 Antisense
GATATTCAATCGGATCCTACCACTT 129 427 138 Antisense
TTCAATCGGATCCTACCACTTCAGA 236 685 142 Antisense
ATCCTACCACTTCAGACACTTATAA 331 37 151 Antisense
GACACTTATAAGAAGCTGTTTACAA 223 367 165 Antisense
AGCTGTTTACAACATGTGAAGCTGC 587 81 178 Antisense
GACTGAAGGACATTGGGTCACTTAT 459 375 212 Antisense
GGGTCACTTATAATCCACTTTATTA 514 497 226 Antisense
Sequence Source Affymetrix Proprietary Database