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[173378_at]

Description AV199228_rc /REP_DB=TREMBL Accession /GB=AV199228 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542g5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 91      6grp_total > 78      4grp_total > 31      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 225.8
(3)
P 		91.2
(-3)
P 		129.7
(-1.3)
P 		135.5
(-1)
P 		135
B 209.7
(3)
P 		109.3
(-3)
P 		121.6
(-2.3)
P 		122.1
(-2.2)
P 		100
C 211.3
(3)
P 		105.3
(-2.4)
P 		93
(-3)
P 		206.9
(2.8)
P 		118
avr 215.6
(3) 		101.9
(-3) 		114.8
(-2.3) 		154.8
(-0.2) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 131.9
(-1.8)
P 		112.9
(-2.6)
P 		163.6
(-0.5)
P 		102.6
(-3)
P 		160.2
(-0.7)
P 		251.9
(3)
P 		149
B 142.5
(-2.3)
P 		125.5
(-2.9)
P 		131.4
(-2.7)
P 		121.8
(-3)
P 		195.1
(-0.7)
P 		309.4
(3)
P 		188
C 115.3
(-3)
P 		138.7
(-2.3)
P 		127.7
(-2.6)
P 		167.1
(-1.5)
P 		186.6
(-0.9)
P 		322.8
(3)
P 		208
avr 129.9
(-2.9) 		125.7
(-3) 		140.9
(-2.5) 		130.5
(-2.8) 		180.6
(-1.1) 		294.7
(3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 82.2
(3)
P 		19.8
(-3)
P 		33.9
(-1.6)
P 		19.8
(-3)
P 		62
B 66.9
(3)
P 		27
(-2.9)
P 		28.2
(-2.7)
P 		26
(-3)
P 		41
C 70
(3)
P 		30.3
(-3)
P 		32.4
(-2.7)
P 		34.9
(-2.3)
P 		40
avr 73
(3) 		25.7
(-3) 		31.5
(-2.3) 		26.9
(-2.8) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 24.3
(-3)
P 		40.2
(-0.4)
P 		35.6
(-1.2)
P 		26
(-2.7)
P 		48.3
(0.9)
P 		61.3
(3)
P 		37
B 49.6
(-1.7)
P 		41.8
(-2.3)
P 		31.9
(-3)
P 		32.3
(-3)
P 		79.3
(0.4)
P 		115.4
(3)
P 		84
C 42.7
(-2.2)
P 		42.3
(-2.2)
P 		32.5
(-3)
P 		33.6
(-2.9)
P 		60.4
(-0.8)
P 		108
(3)
P 		76
avr 38.9
(-2.2) 		41.4
(-2) 		33.3
(-2.7) 		30.6
(-3) 		62.7
(-0) 		94.9
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173378_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27732
Sequence Type Exemplar sequence
Representative Public ID AV199228 NCBI
Target Description AV199228_rc /REP_DB=TREMBL Accession /GB=AV199228 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058521 NCBI Caenorhabditis elegans Y37E3.1 (Y37E3.1) mRNA, complete cds. 11/11 None
SNAP00000001184 ENSEMBL cdna:SNAP chromosome:CEL140:I:2061738:2063905:-1 11/11 None
GENEFINDER00000001216 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2061738:2063944:-1 11/11 None
Y37E3.1 ENSEMBL cdna:known chromosome:CEL140:I:2061678:2064018:-1 gene:Y37E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2061730-2062821(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E3.1
Entrez Gene 171762 Entrez gene
SwissProt Q9BKU9 EMBL-EBI
WormBase CE26836 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.9007.1.S1_S_AT similar to tetratricopeptide repeat domain 5 cfa
HU35KSUBD:RC_AA252679_AT tetratricopeptide repeat domain 5 hs
U133_X3P:HS.102480.0.S1_3P_AT tetratricopeptide repeat domain 5 hs
HG-U133_PLUS_2:226557_AT tetratricopeptide repeat domain 5 hs
HG-U133B:226557_AT tetratricopeptide repeat domain 5 hs
HG-U95C:58419_AT tetratricopeptide repeat domain 5 hs
RG-U34C:RC_AI176039_AT tetratricopeptide repeat domain 5 (predicted) rn
RAE230A:1388806_AT tetratricopeptide repeat domain 5 (predicted) rn
RAT230_2:1388806_AT tetratricopeptide repeat domain 5 (predicted) rn
RAE230B:1393457_AT Tetratricopeptide repeat domain 5 (predicted) rn
RAT230_2:1393457_AT Tetratricopeptide repeat domain 5 (predicted) rn
RG-U34B:RC_AI029945_AT Tetratricopeptide repeat domain 5 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_490922 Y37E3.1 [Caenorhabditis elegans] gb|AAK27872.1| Hypothetical protein Y37E3.1 [Caenorhabditis elegans] 0.0
blast CAE74335 Hypothetical protein CBG22048 [Caenorhabditis briggsae] 1.0E-170
blast CAE74335 Hypothetical protein CBG22048 [Caenorhabditis briggsae] 1.0E-165
blast AAH70853 LOC431931 protein [Xenopus laevis] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 0.0074
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-8
Pfam IPR001440 EMBL-EBI TPR repeat 0.0074
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-8
Sequence
Target Sequence 
>C. ELEGANS:173378_AT
tcggccacgacgagactattccggttgcccttgttggtgtcgacgccgccggcgaagtnt
acggcattacaatctacaattgcctatctaatttcggatttgttatcggcgacaccgtga
cgatcgcgaaacctgattttcgagaaatcaagaatctcacaattccctccgatccagaaa
tccacgtggattcggtgaaatggatccgtgtagcaacgccga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCCACGACGAGACTATTCCGGT 564 247 14 Antisense
GCATTACAATCTACAATTGCCTATC 649 307 77 Antisense
CAATTGCCTATCTAATTTCGGATTT 511 179 90 Antisense
TTTCGGATTTGTTATCGGCGACACC 269 671 105 Antisense
TGTTATCGGCGACACCGTGACGATC 188 561 114 Antisense
GGCGACACCGTGACGATCGCGAAAC 62 543 121 Antisense
ACCGTGACGATCGCGAAACCTGATT 274 89 127 Antisense
GATCGCGAAACCTGATTTTCGAGAA 688 383 135 Antisense
AGAAATCAAGAATCTCACAATTCCC 53 73 156 Antisense
GTGGATTCGGTGAAATGGATCCGTG 553 489 199 Antisense
AAATGGATCCGTGTAGCAACGCCGA 207 119 211 Antisense
Sequence Source Affymetrix Proprietary Database