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[173377_s_at]

Description AV184845_rc /REP_DB=TREMBL Accession /GB=AV184845 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk670c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 11      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 422.1
(-3)
P 		501.6
(-1.8)
P 		425.2
(-3)
P 		812.6
(3)
P 		391
B 527.2
(-0.7)
P 		410.7
(-2.7)
P 		392
(-3)
P 		738.5
(3)
P 		347
C 492.8
(-1.7)
P 		479.9
(-1.9)
P 		422.1
(-3)
P 		746.1
(3)
P 		324
avr 480.7
(-1.8) 		464.1
(-2.1) 		413.1
(-3) 		765.7
(3) 		353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 382.8
(-0.2)
P 		242.9
(-3)
P 		316.6
(-1.5)
P 		322
(-1.4)
P 		382.9
(-0.2)
P 		545.4
(3)
P 		303
B 262
(-3)
P 		268.7
(-2.9)
P 		299.1
(-2.4)
P 		307.1
(-2.3)
P 		403.9
(-0.8)
P 		645.7
(3)
P 		384
C 249.4
(-3)
P 		286.7
(-2.5)
P 		291.6
(-2.5)
P 		303.2
(-2.3)
P 		312.7
(-2.2)
P 		710.7
(3)
P 		461
avr 298.1
(-2.5) 		266.1
(-3) 		302.4
(-2.4) 		310.8
(-2.3) 		366.5
(-1.4) 		633.9
(3) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 153.7
(3)
P 		108.9
(-3)
P 		111.1
(-2.7)
P 		119
(-1.6)
P 		45
B 168.1
(3)
P 		101.4
(-2.2)
P 		90.8
(-3)
P 		157.4
(2.2)
P 		77
C 163.1
(3)
P 		138
(-1)
P 		147.1
(0.4)
P 		125.8
(-3)
P 		37
avr 161.6
(3) 		116.1
(-3) 		116.3
(-3) 		134.1
(-0.6) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 70.6
(-2.8)
P 		86.4
(-1.4)
P 		69
(-3)
P 		81.7
(-1.8)
P 		115.5
(1.4)
P 		132.8
(3)
P 		64
B 91.1
(-2.3)
P 		89.4
(-2.4)
P 		72.6
(-3)
P 		81.4
(-2.7)
P 		164.1
(0.3)
P 		240.8
(3)
P 		168
C 92.4
(-1.9)
P 		87.5
(-2.1)
P 		74.2
(-2.6)
P 		61
(-3)
P 		101.2
(-1.6)
P 		237.9
(3)
P 		177
avr 84.7
(-2.4) 		87.8
(-2.3) 		71.9
(-3) 		74.7
(-2.9) 		126.9
(-0.5) 		203.8
(3) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173377_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27696
Sequence Type Exemplar sequence
Representative Public ID AV184845 NCBI
Target Description AV184845_rc /REP_DB=TREMBL Accession /GB=AV184845 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk670c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026995(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026995 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-169) (tag-169) mRNA, complete cds. 11/11 None
SNAP00000000991 ENSEMBL cdna:SNAP chromosome:CEL140:II:8997743:8999440:1 11/11 None
GENEFINDER00000000997 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8997743:8999440:1 11/11 None
F44G4.4a ENSEMBL cdna:known chromosome:CEL140:II:8997743:8999624:1 gene:F44G4.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174436 2 1 NM_001026995 173377_s_at (11), 189707_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8999268-8999530(+) 86.71 86.71
Public Domain and Genome References
Ensembl F44G4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90120 Hypothetical protein F44G4.4a [Caenorhabditis elegans] ref|NP_001022166.1| Temporarily Assigned Gene name family member (tag-169) [Caenorhabditis elegans] 0.0
blast CAE59783 Hypothetical protein CBG03235 [Caenorhabditis briggsae] 1.0E-163
blast CAH04715 Hypothetical protein F44G4.4b [Caenorhabditis elegans] ref|NP_001022167.1| Temporarily Assigned Gene name family member (tag-169) [Caenorhabditis elegans] 3.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 8.3E-9
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-6
Sequence
Target Sequence 
>C. ELEGANS:173377_S_AT
gtaaccgcagagaacgtgatcgaccggatagacgaccgattcaaaatgaagcacctctgc
ccatgccattcgtccgcccaccacaagattactcataccgtcagcaaaattctcccctcg
agaggagatactgggcacctggagactcgagaggaccaggatggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACCGCAGAGAACGTGATCGACC 600 461 15 Antisense
GAACGTGATCGACCGGATAGACGAC 404 347 26 Antisense
TCGACCGGATAGACGACCGATTCAA 134 603 34 Antisense
TCAAAATGAAGCACCTCTGCCCATG 201 629 55 Antisense
CCCACCACAAGATTACTCATACCGT 47 259 91 Antisense
ACAAGATTACTCATACCGTCAGCAA 569 113 97 Antisense
TCATACCGTCAGCAAAATTCTCCCC 664 619 107 Antisense
AATTCTCCCCTCGAGAGGAGATACT 211 177 122 Antisense
GGAGATACTGGGCACCTGGAGACTC 516 513 138 Antisense
GGGCACCTGGAGACTCGAGAGGACC 599 491 147 Antisense
GAGACTCGAGAGGACCAGGATGGTG 502 393 156 Antisense
Sequence Source Affymetrix Proprietary Database